commit: 7edd503dc9baff0a0be17fb94f6a3e0d5b1538e6
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 18 20:02:00 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 18 20:02:00 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7edd503d
sci-biology/jtreeview-bin: package using upstream's binary
Package-Manager: Portage-2.3.3, Repoman-2.3.1
.../jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild | 44 ++++++++++++++++++++++
sci-biology/jtreeview-bin/metadata.xml | 12 ++++++
2 files changed, 56 insertions(+)
diff --git a/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild
b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild
new file mode 100644
index 000000000..c85e2473e
--- /dev/null
+++ b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit java-pkg-2 java-ant-2 eutils perl-module
+
+S="${WORKDIR}"/TreeView-1.1.6r4-bin
+
+DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
+HOMEPAGE="http://jtreeview.sourceforge.net/";
+SRC_URI="
+
http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-bin.tar.gz
+
http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz";
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="" # src_install is wrong somehow, TreeView.jar does not start
+IUSE=""
+
+DEPEND="
+ >virtual/jdk-1.5:*
+ !sci-biology/jtreeview"
+RDEPEND="${DEPEND}
+ >=virtual/jre-1.5:*"
+
+# TODO: use xltproc to create docs following TreeView-1.1.6r4-src/doc/README
+
+src_install(){
+ java-pkg_dojar TreeView.jar
+ java-pkg_dolauncher ${PN} TreeView.jar
+ insinto /usr/share/"${PN}"/lib/plugins
+ doins plugins/*.jar
+ cd ../helper-scripts-0.0.2 || die
+ perl_set_version
+ insinto "${VENDOR_LIB}"
+ doins *.pm
+ dobin *.pl
+ insinto /usr/share/"${PN}"/examples
+ doins blues.color
+ newdoc README README.helper-scripts
+}
diff --git a/sci-biology/jtreeview-bin/metadata.xml
b/sci-biology/jtreeview-bin/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/jtreeview-bin/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <maintainer type="person">
+ <email>[email protected]</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>[email protected]</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
