commit: 5f3f4d9525b701b6643ecbdfa3835051201c6e25
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Feb 16 09:53:34 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Feb 16 09:53:34 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5f3f4d95
sci-biology/freebayes: force compilation in a single thread as parallel build
fails
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/freebayes/freebayes-9999.ebuild | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/sci-biology/freebayes/freebayes-9999.ebuild
b/sci-biology/freebayes/freebayes-9999.ebuild
index b4eee4419..1b1eb89ed 100644
--- a/sci-biology/freebayes/freebayes-9999.ebuild
+++ b/sci-biology/freebayes/freebayes-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -84,6 +84,10 @@ RDEPEND="${DEPEND}
# g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../ttmath -I../bamtools/src/
-I../vcflib/src/ -I../vcflib/tabixpp/ -I../vcflib/smithwaterman/
-I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/tabixpp/htslib
-I../SeqLib -I../SeqLib/htslib -c freebayes.cpp
+src_compile(){
+ emake -j1 # vcflib/smithwaterman/ sometimes does not compile
+}
+
src_install(){
dobin bin/freebayes bin/bamleftalign
}
