commit: 01a5062038a8bc55319bb81222c9f1bcd369cb20 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Fri Feb 3 16:27:18 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Feb 5 05:17:59 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=01a50620
Shorten all DESCRIPTION to <80 chars Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/beagle/beagle-4.0.ebuild | 2 +- sci-biology/bismark/bismark-0.13.0.ebuild | 2 +- sci-biology/blue/blue-1.1.2.ebuild | 2 +- sci-biology/blue/blue-1.1.3.ebuild | 2 +- sci-biology/cdbfasta/cdbfasta-0.1.ebuild | 2 +- sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild | 2 +- sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild | 2 +- sci-biology/fastqc/fastqc-0.11.3.ebuild | 2 +- sci-biology/generecon/generecon-1.2.1-r1.ebuild | 2 +- sci-biology/genometools/genometools-1.5.7.ebuild | 2 +- sci-biology/genseed/genseed-1.0.22.ebuild | 2 +- sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild | 2 +- sci-biology/kmergenie/kmergenie-1.6971.ebuild | 2 +- sci-biology/lastz/lastz-1.03.66.ebuild | 2 +- sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild | 2 +- sci-biology/mgblast/mgblast-0.1.ebuild | 2 +- sci-biology/mira/mira-4.9.5.ebuild | 2 +- sci-biology/ngsview/ngsview-0.91.ebuild | 2 +- sci-biology/perlprimer/perlprimer-1.1.21.ebuild | 2 +- sci-biology/pileup/pileup-0.6.ebuild | 2 +- sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild | 2 +- sci-biology/samstat/samstat-20130708.ebuild | 2 +- sci-biology/samtools/samtools-1.0-r2.ebuild | 2 +- sci-biology/samtools/samtools-1.1-r1.ebuild | 2 +- sci-biology/samtools/samtools-1.2-r1.ebuild | 2 +- sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild | 2 +- sci-biology/sclust/sclust-0.1.ebuild | 2 +- sci-biology/sequin/sequin-20121202.ebuild | 2 +- sci-biology/sgp2/sgp2-1.1.ebuild | 2 +- sci-biology/sickle/sickle-1.33.ebuild | 2 +- sci-biology/sickle/sickle-9999.ebuild | 2 +- sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild | 2 +- sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 2 +- sci-biology/stacks/stacks-1.44.ebuild | 2 +- sci-biology/subread/subread-1.4.6.ebuild | 2 +- sci-biology/symap/symap-4.0.ebuild | 2 +- sci-biology/tgicl/tgicl-2.1.ebuild | 2 +- sci-biology/trowel/trowel-0.1.4.1.ebuild | 2 +- sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild | 2 +- sci-chemistry/chooch/chooch-5.0.2-r1.ebuild | 2 +- sci-chemistry/concoord/concoord-2.1.2.ebuild | 2 +- sci-chemistry/concoord/concoord-2.1.ebuild | 2 +- sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild | 2 +- sci-chemistry/modelfree/modelfree-4.20.ebuild | 2 +- sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild | 2 +- sci-chemistry/redcat/redcat-3.ebuild | 2 +- sci-chemistry/rosetta/rosetta-3.4.ebuild | 2 +- sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild | 2 +- sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild | 2 +- sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild | 2 +- sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild | 2 +- sci-libs/asl/asl-0.1.7.ebuild | 2 +- sci-libs/asl/asl-9999.ebuild | 2 +- sci-libs/ipp/ipp-8.2.2.187-r1.ebuild | 2 +- sci-mathematics/apron/apron-0.9.10-r1.ebuild | 2 +- sci-misc/elmer-gui/elmer-gui-9999.ebuild | 2 +- sci-misc/mitlm/mitlm-0.4.1.ebuild | 2 +- sci-physics/abinit/abinit-7.10.4.ebuild | 2 +- sci-physics/abinit/abinit-7.4.2-r1.ebuild | 2 +- sci-physics/abinit/abinit-7.6.4-r1.ebuild | 2 +- sci-physics/mc-tester/mc-tester-1.25.0.ebuild | 2 +- sci-physics/openmx/openmx-3.6.ebuild | 2 +- sci-physics/openmx/openmx-3.7.8.ebuild | 2 +- 63 files changed, 63 insertions(+), 63 deletions(-) diff --git a/sci-biology/beagle/beagle-4.0.ebuild b/sci-biology/beagle/beagle-4.0.ebuild index 70caec7..c370265 100644 --- a/sci-biology/beagle/beagle-4.0.ebuild +++ b/sci-biology/beagle/beagle-4.0.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit java-pkg-2 java-ant-2 -DESCRIPTION="Genotype calling/phasing, imputation of ungenotyped markers, identity-by-descent segment detection" +DESCRIPTION="Genotype calling/phasing, imputation of ungenotyped markers" HOMEPAGE="http://faculty.washington.edu/browning/beagle/beagle.html"; SRC_URI="http://faculty.washington.edu/browning/beagle/beagle.r1399.src.zip http://faculty.washington.edu/browning/beagle/beagle.03Mar15.pdf diff --git a/sci-biology/bismark/bismark-0.13.0.ebuild b/sci-biology/bismark/bismark-0.13.0.ebuild index 1f6616e..64f06c0 100644 --- a/sci-biology/bismark/bismark-0.13.0.ebuild +++ b/sci-biology/bismark/bismark-0.13.0.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit toolchain-funcs -DESCRIPTION="A tool to map bisulfite converted sequence reads and determine cytosine methylation states" +DESCRIPTION="Map bisulfite converted sequence reads and determine cytosine methylation states" HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/bismark/"; SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/${PN}/${PN}_v${PV}.tar.gz"; diff --git a/sci-biology/blue/blue-1.1.2.ebuild b/sci-biology/blue/blue-1.1.2.ebuild index 4591d3c..efb3480 100644 --- a/sci-biology/blue/blue-1.1.2.ebuild +++ b/sci-biology/blue/blue-1.1.2.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Error corrector for Illummina and Roche/454 able to also fix insertions and deletions" +DESCRIPTION="Error corrector for Illummina and Roche/454, inculding insertions and deletions" HOMEPAGE="http://www.bioinformatics.csiro.au/blue"; SRC_URI=" http://www.bioinformatics.csiro.au/public/files/Linux-${PV}.tar.gz -> ${P}.tar.gz diff --git a/sci-biology/blue/blue-1.1.3.ebuild b/sci-biology/blue/blue-1.1.3.ebuild index 4591d3c..59561cc 100644 --- a/sci-biology/blue/blue-1.1.3.ebuild +++ b/sci-biology/blue/blue-1.1.3.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Error corrector for Illummina and Roche/454 able to also fix insertions and deletions" +DESCRIPTION="Error corrector for Illummina and Roche/454, including insertions and deletions" HOMEPAGE="http://www.bioinformatics.csiro.au/blue"; SRC_URI=" http://www.bioinformatics.csiro.au/public/files/Linux-${PV}.tar.gz -> ${P}.tar.gz diff --git a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild index 06cc243..1dcd7f6 100644 --- a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild +++ b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="FASTA record indexing/retrievieng utility, a part of TIGR Gene Indices project tools" +DESCRIPTION="FASTA record indexing/retrievieng utility" HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software"; SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/cdbfasta/cdbfasta.tar.gz"; diff --git a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild index 10f36ce..c582526 100644 --- a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild +++ b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild @@ -7,7 +7,7 @@ EAPI=5 PERL_EXPORT_PHASE_FUNCTIONS=no inherit perl-module eutils toolchain-funcs -DESCRIPTION="Assemble and compare genotype variants (variant discovery without reference sequence)" +DESCRIPTION="Genotype variant discovery without reference sequence" HOMEPAGE="http://cortexassembler.sourceforge.net/index_cortex_var.html"; SRC_URI="http://sourceforge.net/projects/cortexassembler/files/cortex_var/latest/CORTEX_release_v1.0.5.21.tgz http://cortexassembler.sourceforge.net/cortex_var_user_manual.pdf"; diff --git a/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild b/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild index 1346fd2..fa60ef7 100644 --- a/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild +++ b/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Annotate VCF files and prioritize genome/exome mutations (Jannovar, UCSC KnownGenes, hg19)" +DESCRIPTION="Annotate VCF files and prioritize genome/exome mutations" HOMEPAGE="http://www.sanger.ac.uk/science/tools/exomiser"; SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${PV}-distribution.zip ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/GenomiserREADME -> ${PN}.README diff --git a/sci-biology/fastqc/fastqc-0.11.3.ebuild b/sci-biology/fastqc/fastqc-0.11.3.ebuild index 64b41ab..f558a75 100644 --- a/sci-biology/fastqc/fastqc-0.11.3.ebuild +++ b/sci-biology/fastqc/fastqc-0.11.3.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit java-pkg-2 eutils java-ant-2 -DESCRIPTION="Perl-based wrapper around java apps to quality control FASTA/FASTQ sequence files" +DESCRIPTION="Quality control FASTA/FASTQ sequence files" HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"; SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip"; diff --git a/sci-biology/generecon/generecon-1.2.1-r1.ebuild b/sci-biology/generecon/generecon-1.2.1-r1.ebuild index d3c8acb..81c81ba 100644 --- a/sci-biology/generecon/generecon-1.2.1-r1.ebuild +++ b/sci-biology/generecon/generecon-1.2.1-r1.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit autotools eutils -DESCRIPTION="Disequilibrium gene mapping based on coalescent theory using Bayesian Markov Chain MC methods" +DESCRIPTION="Disequilibrium gene mapping based on coalescent theory using Bayesian MC methods" HOMEPAGE="http://www.daimi.au.dk/~mailund/GeneRecon/"; SRC_URI="http://www.daimi.au.dk/~mailund/GeneRecon/download/${P}.tar.gz"; diff --git a/sci-biology/genometools/genometools-1.5.7.ebuild b/sci-biology/genometools/genometools-1.5.7.ebuild index b62bfe1..2a78a5c 100644 --- a/sci-biology/genometools/genometools-1.5.7.ebuild +++ b/sci-biology/genometools/genometools-1.5.7.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="A collection of tools for bioinformatics (notably Tallymer, Readjoiner, gff3validator)" +DESCRIPTION="Tools for bioinformatics (notably Tallymer, Readjoiner, gff3validator)" HOMEPAGE="http://genometools.org"; SRC_URI="http://genometools.org/pub/${P}.tar.gz"; diff --git a/sci-biology/genseed/genseed-1.0.22.ebuild b/sci-biology/genseed/genseed-1.0.22.ebuild index 92b1812..70919b8 100644 --- a/sci-biology/genseed/genseed-1.0.22.ebuild +++ b/sci-biology/genseed/genseed-1.0.22.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Seed-driven progressive assembly program using legacy NCBI blast, CAP3, and optionally cross_match" +DESCRIPTION="Seed-driven progressive assembly program" HOMEPAGE="http://www.coccidia.icb.usp.br/genseed/"; SRC_URI="http://www.coccidia.icb.usp.br/genseed/download/${P}.tar.gz"; diff --git a/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild b/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild index ba64ab2..0130578 100644 --- a/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild +++ b/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Detection of structural variation breakpoints in unique and duplicated genomic regions" +DESCRIPTION="Detection of structural variation breakpoints" HOMEPAGE="http://code.google.com/p/hydra-sv/"; SRC_URI="http://hydra-sv.googlecode.com/files/Hydra.v${PV}.tar.gz"; diff --git a/sci-biology/kmergenie/kmergenie-1.6971.ebuild b/sci-biology/kmergenie/kmergenie-1.6971.ebuild index ef96c0a..6762ecd 100644 --- a/sci-biology/kmergenie/kmergenie-1.6971.ebuild +++ b/sci-biology/kmergenie/kmergenie-1.6971.ebuild @@ -8,7 +8,7 @@ inherit eutils PYTHON_COMPAT=( python{2_6,2_7} ) -DESCRIPTION="Estimate best k-mer length to be used in novo assemblies (default set during compilation is 121)" +DESCRIPTION="Estimate best k-mer length to be used in novo assemblies" HOMEPAGE="http://kmergenie.bx.psu.edu/"; SRC_URI="http://kmergenie.bx.psu.edu/"${P}".tar.gz"; diff --git a/sci-biology/lastz/lastz-1.03.66.ebuild b/sci-biology/lastz/lastz-1.03.66.ebuild index a3b2ae1..99d9c22 100644 --- a/sci-biology/lastz/lastz-1.03.66.ebuild +++ b/sci-biology/lastz/lastz-1.03.66.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit eutils flag-o-matic toolchain-funcs -DESCRIPTION="A pairwise DNA sequence aligner (also chromosome to chromosome), a BLASTZ replacement" +DESCRIPTION="A pairwise DNA sequence aligner, a BLASTZ replacement" HOMEPAGE="http://www.bx.psu.edu/~rsharris/lastz/"; SRC_URI="http://www.bx.psu.edu/~rsharris/lastz/newer/${P}.tar.gz"; diff --git a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild index 5701bb8..59c098d 100644 --- a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild +++ b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="genome annotation tool: view, modify, and store annotation for prokaryotic and eukaryotic genomes" +DESCRIPTION="Genome annotation tool" HOMEPAGE="http://manatee.sourceforge.net/jcvi/downloads.shtml"; SRC_URI="http://downloads.sourceforge.net/project/manatee/manatee/manatee-2.4.3/manatee-2.4.3.tgz"; diff --git a/sci-biology/mgblast/mgblast-0.1.ebuild b/sci-biology/mgblast/mgblast-0.1.ebuild index 0a95c2e..0114713 100644 --- a/sci-biology/mgblast/mgblast-0.1.ebuild +++ b/sci-biology/mgblast/mgblast-0.1.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Customized version of megablast from TIGR Gene Indices project used by tgicl and gicl utilities" +DESCRIPTION="Customized version of megablast from TIGR Gene Indices project" HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/"; SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/mgblast.tar.gz"; diff --git a/sci-biology/mira/mira-4.9.5.ebuild b/sci-biology/mira/mira-4.9.5.ebuild index c77a962..268d607 100644 --- a/sci-biology/mira/mira-4.9.5.ebuild +++ b/sci-biology/mira/mira-4.9.5.ebuild @@ -9,7 +9,7 @@ MY_PV="${PV/_}" # convert from mira-4.0_rc2 (Gentoo ebuild filename derived) to inherit autotools eutils multilib -DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" +DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler" HOMEPAGE="http://www.chevreux.org/projects_mira.html"; SRC_URI=" http://sourceforge.net/projects/mira-assembler/files/MIRA/development/"${PN}"-"${MY_PV}".tar.bz2 diff --git a/sci-biology/ngsview/ngsview-0.91.ebuild b/sci-biology/ngsview/ngsview-0.91.ebuild index 8d46197..863bf10 100644 --- a/sci-biology/ngsview/ngsview-0.91.ebuild +++ b/sci-biology/ngsview/ngsview-0.91.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit qt4-r2 -DESCRIPTION="Display, edit next-gen sequence alignment (BED, BLAST, Eland, mapview processed MAQ, Corona formats)" +DESCRIPTION="Display, edit NGS alignments" HOMEPAGE="http://sourceforge.net/projects/ngsview"; SRC_URI="mirror://sourceforge/projects/${PN}/files/${PN}/${P}.tar.gz" diff --git a/sci-biology/perlprimer/perlprimer-1.1.21.ebuild b/sci-biology/perlprimer/perlprimer-1.1.21.ebuild index e6f00dc..235a0ab 100644 --- a/sci-biology/perlprimer/perlprimer-1.1.21.ebuild +++ b/sci-biology/perlprimer/perlprimer-1.1.21.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="GUI application written in Perl to design primers for standard PCR, bisulphite PCR and Real-time PCR" +DESCRIPTION="Primers design for standard PCR, bisulphite PCR and Real-time PCR" HOMEPAGE="http://perlprimer.sourceforge.net/"; SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" diff --git a/sci-biology/pileup/pileup-0.6.ebuild b/sci-biology/pileup/pileup-0.6.ebuild index 77322f4..260ad8a 100644 --- a/sci-biology/pileup/pileup-0.6.ebuild +++ b/sci-biology/pileup/pileup-0.6.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="SSAHA2-based pipeline to align reads into format also understood by samtools, maq" +DESCRIPTION="SSAHA2-based pipeline to align reads" HOMEPAGE="http://www.sanger.ac.uk/resources/software/ssaha2/"; SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/pileup.tgz"; diff --git a/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild b/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild index 4b6f645..df1a092 100644 --- a/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild +++ b/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild @@ -4,7 +4,7 @@ EAPI=6 -DESCRIPTION="Convert from ace to gap4 (of staden v1.x), not needed to convert ace for gap5 of staden v2" +DESCRIPTION="ace to gap4 converter" HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf"; SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/roche454ace2gap-2010-12-08.tgz"; diff --git a/sci-biology/samstat/samstat-20130708.ebuild b/sci-biology/samstat/samstat-20130708.ebuild index 61c4135..bfd17cd 100644 --- a/sci-biology/samstat/samstat-20130708.ebuild +++ b/sci-biology/samstat/samstat-20130708.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit eutils -DESCRIPTION="Show statistics of BAM/SAM (error profiles, nucleotide composition, base quals, len. distribution)" +DESCRIPTION="Statistics of BAM/SAM files" HOMEPAGE="http://samstat.sourceforge.net"; SRC_URI="http://sourceforge.net/projects/samstat/files/samstat.tgz"; diff --git a/sci-biology/samtools/samtools-1.0-r2.ebuild b/sci-biology/samtools/samtools-1.0-r2.ebuild index b10e681..4c85410 100644 --- a/sci-biology/samtools/samtools-1.0-r2.ebuild +++ b/sci-biology/samtools/samtools-1.0-r2.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit eutils multilib python-r1 toolchain-funcs -DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" +DESCRIPTION="Utilities for SAM (Sequence Alignment/Map)" HOMEPAGE="http://www.htslib.org/"; SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" diff --git a/sci-biology/samtools/samtools-1.1-r1.ebuild b/sci-biology/samtools/samtools-1.1-r1.ebuild index 9941156..5932f8d 100644 --- a/sci-biology/samtools/samtools-1.1-r1.ebuild +++ b/sci-biology/samtools/samtools-1.1-r1.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit eutils multilib python-r1 toolchain-funcs -DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" +DESCRIPTION="Utilities for SAM (Sequence Alignment/Map)" HOMEPAGE="http://www.htslib.org/"; SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" diff --git a/sci-biology/samtools/samtools-1.2-r1.ebuild b/sci-biology/samtools/samtools-1.2-r1.ebuild index dcbd07b..87d702b 100644 --- a/sci-biology/samtools/samtools-1.2-r1.ebuild +++ b/sci-biology/samtools/samtools-1.2-r1.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit eutils multilib python-r1 toolchain-funcs -DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" +DESCRIPTION="Utilities for SAM (Sequence Alignment/Map)" HOMEPAGE="http://www.htslib.org/"; SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" diff --git a/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild index 0a7ae54..b57b6a0 100644 --- a/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild +++ b/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit python-r1 -DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference genome" +DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds" HOMEPAGE=" http://sourceforge.net/projects/scaffold-b http://edwards.sdsu.edu/scaffold_builder"; diff --git a/sci-biology/sclust/sclust-0.1.ebuild b/sci-biology/sclust/sclust-0.1.ebuild index cb5fe1f..1ee71b6 100644 --- a/sci-biology/sclust/sclust-0.1.ebuild +++ b/sci-biology/sclust/sclust-0.1.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="seeded clustering tool by processing pairwise alignments from TIGR Gene Indices project tools" +DESCRIPTION="Seeded clustering tool by processing pairwise alignments" HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/"; SRC_URI=" ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz diff --git a/sci-biology/sequin/sequin-20121202.ebuild b/sci-biology/sequin/sequin-20121202.ebuild index f0fc001..da9832e 100644 --- a/sci-biology/sequin/sequin-20121202.ebuild +++ b/sci-biology/sequin/sequin-20121202.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit eutils -DESCRIPTION="A tool to facilitate submission of data to the GenBank, EMBL, and DDBJ sequence databases" +DESCRIPTION="Facilitate submission of data to the GenBank, EMBL, and DDBJ sequence databases" HOMEPAGE="http://www.ncbi.nlm.nih.gov/Sequin/"; SRC_URI=" amd64? ( ftp://ftp.ncbi.nih.gov/sequin/sequin.linux-x86_64.tar.gz -> ${P}-x86_64.tar.gz ) diff --git a/sci-biology/sgp2/sgp2-1.1.ebuild b/sci-biology/sgp2/sgp2-1.1.ebuild index 0c8f94f..b8ab027 100644 --- a/sci-biology/sgp2/sgp2-1.1.ebuild +++ b/sci-biology/sgp2/sgp2-1.1.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit eutils -DESCRIPTION="Find ORFs by comparing two genomic/EST sequences using tblastx and geneid ab initio predictions" +DESCRIPTION="Find ORFs by comparing two genomic/EST sequences" HOMEPAGE="http://genome.crg.es/software/sgp2/"; SRC_URI="ftp://genome.crg.es/pub/software/sgp2/sgp2_v1.1.May_8_2012.tar.gz"; diff --git a/sci-biology/sickle/sickle-1.33.ebuild b/sci-biology/sickle/sickle-1.33.ebuild index c790d5b..1d79478 100644 --- a/sci-biology/sickle/sickle-1.33.ebuild +++ b/sci-biology/sickle/sickle-1.33.ebuild @@ -8,7 +8,7 @@ inherit eutils eutils toolchain-funcs [ "$PV" == "9999" ] && inherit git-r3 -DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa" +DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data" HOMEPAGE="https://github.com/najoshi/sickle"; if [ "$PV" == "9999" ]; then EGIT_REPO_URI="https://github.com/najoshi/sickle"; diff --git a/sci-biology/sickle/sickle-9999.ebuild b/sci-biology/sickle/sickle-9999.ebuild index c790d5b..1d79478 100644 --- a/sci-biology/sickle/sickle-9999.ebuild +++ b/sci-biology/sickle/sickle-9999.ebuild @@ -8,7 +8,7 @@ inherit eutils eutils toolchain-funcs [ "$PV" == "9999" ] && inherit git-r3 -DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa" +DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data" HOMEPAGE="https://github.com/najoshi/sickle"; if [ "$PV" == "9999" ]; then EGIT_REPO_URI="https://github.com/najoshi/sickle"; diff --git a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild index c873326..772cd67 100644 --- a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild +++ b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Adaptor and MID removal / trimming tool, also for Illumina-oriented paired-end reads" +DESCRIPTION="Adaptor and MID removal / trimming tool" HOMEPAGE="http://sourceforge.net/projects/skewer"; SRC_URI=" http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64 diff --git a/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild b/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild index 694fc7d..fda5368 100644 --- a/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild +++ b/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild @@ -7,7 +7,7 @@ EAPI=5 MY_PN="${PN%-bin}" MY_P="${MY_PN}-${PV}" -DESCRIPTION="Pairwise sequence alignment mapping DNA reads onto genomic reference, better over SSAHA2" +DESCRIPTION="Pairwise sequence alignment mapping DNA reads onto genomic reference" HOMEPAGE="http://www.sanger.ac.uk/resources/software/smalt/"; SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/${MY_PN}/${MY_P}.tgz"; diff --git a/sci-biology/stacks/stacks-1.44.ebuild b/sci-biology/stacks/stacks-1.44.ebuild index 0b4ca80..4861732 100644 --- a/sci-biology/stacks/stacks-1.44.ebuild +++ b/sci-biology/stacks/stacks-1.44.ebuild @@ -8,7 +8,7 @@ AUTOTOOLS_AUTORECONF=yes inherit flag-o-matic eutils perl-module webapp autotools -DESCRIPTION="Analyze restriction enzyme data, draw gen. maps, population genomics (RAD-seq sequencing)" +DESCRIPTION="Analyze restriction enzyme data, draw gen. maps, population genomics" HOMEPAGE="http://creskolab.uoregon.edu/stacks"; SRC_URI="http://creskolab.uoregon.edu/stacks/source/${P}.tar.gz"; diff --git a/sci-biology/subread/subread-1.4.6.ebuild b/sci-biology/subread/subread-1.4.6.ebuild index 3f42edf..ac164fd 100644 --- a/sci-biology/subread/subread-1.4.6.ebuild +++ b/sci-biology/subread/subread-1.4.6.ebuild @@ -6,7 +6,7 @@ EAPI=5 [ "$PV" == "9999" ] && inherit subversion -DESCRIPTION="NGS suite for read mapping, analysis of mapped reads, summary of exon/intron/gene counts" +DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts" HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/"; if [ "$PV" == "9999" ]; then ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk"; diff --git a/sci-biology/symap/symap-4.0.ebuild b/sci-biology/symap/symap-4.0.ebuild index 42ce623..9fe8c96 100644 --- a/sci-biology/symap/symap-4.0.ebuild +++ b/sci-biology/symap/symap-4.0.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Synteny Mapping and Analysis Program between chromosomes, contigs and physical maps" +DESCRIPTION="Synteny Mapping and Analysis Program" HOMEPAGE="http://www.agcol.arizona.edu/software/symap/"; SRC_URI="symap_40.tar.gz" diff --git a/sci-biology/tgicl/tgicl-2.1.ebuild b/sci-biology/tgicl/tgicl-2.1.ebuild index ae10de3..190b419 100644 --- a/sci-biology/tgicl/tgicl-2.1.ebuild +++ b/sci-biology/tgicl/tgicl-2.1.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit perl-module -DESCRIPTION="TIGR perl scripts for clustering large EST/mRNAs datasets and aceconv, mgblast and pvmsx binaries" +DESCRIPTION="TIGR perl scripts for clustering" HOMEPAGE="http://sourceforge.net/projects/tgicl"; SRC_URI="http://sourceforge.net/projects/tgicl/files/tgicl%20v2.1/TGICL-2.1.tar.gz"; diff --git a/sci-biology/trowel/trowel-0.1.4.1.ebuild b/sci-biology/trowel/trowel-0.1.4.1.ebuild index ae4282f..bfdd7b0 100644 --- a/sci-biology/trowel/trowel-0.1.4.1.ebuild +++ b/sci-biology/trowel/trowel-0.1.4.1.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Error corrector for genomic Illumina FASTQ reads using QUALs and not coverage info" +DESCRIPTION="Error corrector for genomic Illumina FASTQ reads" HOMEPAGE="http://sourceforge.net/projects/trowel-ec"; SRC_URI="http://downloads.sourceforge.net/project/trowel-ec/src/trowel.0.1.4.1.src.tar.gz"; diff --git a/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild b/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild index 35f7f58..a1aaaca 100644 --- a/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild +++ b/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild @@ -10,7 +10,7 @@ inherit eutils python-single-r1 toolchain-funcs MY_PV="${PV/_}" # convert from _rc2 to rc2 -DESCRIPTION="De novo whole-genome shotgun DNA sequence OLC assembler (Celera Assembler, CABOG)" +DESCRIPTION="De novo whole-genome shotgun DNA sequence OLC assembler" HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/"; SRC_URI="http://sourceforge.net/projects/${PN}/files/${PN}/wgs-8.3/wgs-${MY_PV}.tar.bz2"; diff --git a/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild b/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild index 7341392..87f91cf 100644 --- a/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild +++ b/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild @@ -8,7 +8,7 @@ AUTOTOOLS_AUTORECONF=true inherit autotools-utils multilib toolchain-funcs -DESCRIPTION="a program that will automatically determine values of the anomalous scattering factors" +DESCRIPTION="Automatically determine values of the anomalous scattering factors" HOMEPAGE="http://www.gwyndafevans.co.uk/id2.html"; SRC_URI="ftp://ftp.ccp4.ac.uk/${PN}/${PV}/packed/${P}.tar.gz"; diff --git a/sci-chemistry/concoord/concoord-2.1.2.ebuild b/sci-chemistry/concoord/concoord-2.1.2.ebuild index e6308ea..e1e2bd9 100644 --- a/sci-chemistry/concoord/concoord-2.1.2.ebuild +++ b/sci-chemistry/concoord/concoord-2.1.2.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Method to generate protein conformations around a known structure based on geometric restrictions" +DESCRIPTION="Protein conformations around a known structure based on geometric restrictions" HOMEPAGE="http://www.mpibpc.mpg.de/groups/de_groot/concoord/concoord.html"; SRC_URI=" amd64? ( http://www3.mpibpc.mpg.de/groups/de_groot/${PN}/${PN}_${PV}_linux64.tgz ) diff --git a/sci-chemistry/concoord/concoord-2.1.ebuild b/sci-chemistry/concoord/concoord-2.1.ebuild index 8ec96b9..6f5ec47 100644 --- a/sci-chemistry/concoord/concoord-2.1.ebuild +++ b/sci-chemistry/concoord/concoord-2.1.ebuild @@ -4,7 +4,7 @@ EAPI=5 -DESCRIPTION="Method to generate protein conformations around a known structure based on geometric restrictions" +DESCRIPTION="Protein conformations around a known structure based on geometric restrictions" HOMEPAGE="http://www.mpibpc.mpg.de/groups/de_groot/concoord/concoord.html"; SRC_URI=" amd64? ( http://www.mpibpc.mpg.de/groups/de_groot/concoord/concoord2.1_linux_x86_64.tgz ) diff --git a/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild b/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild index 8123048..4909fbe 100644 --- a/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild +++ b/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild @@ -10,7 +10,7 @@ inherit python-single-r1 MY_P="${PN}${PV}" -DESCRIPTION="Program for processing of non-uniformly sampled (NUS) multidimensional NMR spectra" +DESCRIPTION="Program for processing of NUS multidimensional NMR spectra" HOMEPAGE="http://www.nmr.gu.se/~mdd/"; SRC_URI="http://pc8.nmr.gu.se/~mdd/Downloads/${MY_P}.tgz"; diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild index a40d489..66f5721 100644 --- a/sci-chemistry/modelfree/modelfree-4.20.ebuild +++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit fortran-2 multilib -DESCRIPTION="A program for optimizing Lipari-Szabo model free parameters to heteronuclear relaxation data" +DESCRIPTION="Optimizing Lipari-Szabo model free parameters to heteronuclear relaxation data" HOMEPAGE="http://www.palmer.hs.columbia.edu/software/modelfree.html"; SRC_URI="http://www.palmer.hs.columbia.edu/software/modelfree4_linux.tar.gz"; diff --git a/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild b/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild index 08696a4..bc7cf14 100644 --- a/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild +++ b/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit eutils toolchain-funcs -DESCRIPTION="Intended to facilitate the transition from refmac5 refinement to shelxh or shelxl refinement" +DESCRIPTION="Facilitate the transition from refmac5 refinement to shelxh or shelxl refinement" HOMEPAGE="http://shelx.uni-ac.gwdg.de/~tg/research/programs/conv/mtz2x/mtz2hkl/"; SRC_URI="http://shelx.uni-ac.gwdg.de/~tg/research/programs/conv/mtz2x/${PN}/downloads/${PV}/${PN}_v${PV}.tar.gz"; diff --git a/sci-chemistry/redcat/redcat-3.ebuild b/sci-chemistry/redcat/redcat-3.ebuild index bf8d739..3105334 100644 --- a/sci-chemistry/redcat/redcat-3.ebuild +++ b/sci-chemistry/redcat/redcat-3.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit cmake-utils java-pkg-2 -DESCRIPTION="Analysis of residual dipolar couplings (RDCs) for structure validation and elucidation" +DESCRIPTION="Analysis of RDCs for structure validation and elucidation" HOMEPAGE="http://ifestos.cse.sc.edu/software.php"; SRC_URI="http://ifestos.cse.sc.edu/downloads.php?get=Redcat.${PV}.tar.gz -> Redcat.${PV}.tar.gz" diff --git a/sci-chemistry/rosetta/rosetta-3.4.ebuild b/sci-chemistry/rosetta/rosetta-3.4.ebuild index 139641e..241cdba 100644 --- a/sci-chemistry/rosetta/rosetta-3.4.ebuild +++ b/sci-chemistry/rosetta/rosetta-3.4.ebuild @@ -11,7 +11,7 @@ inherit eutils multilib prefix scons-utils toolchain-funcs versionator #MY_P="${PN}$(get_major_version)_source" MY_P="${PN}${PV}_source" -DESCRIPTION="Prediction and design of protein structures, folding mechanisms, and protein-protein interactions" +DESCRIPTION="Prediction of protein structures and protein-protein interactions" HOMEPAGE="http://www.rosettacommons.org/"; SRC_URI="${MY_P}.tgz patch_rosetta3.4_to_CSROSETTA3_ver1.3.txt" diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild index b56d269..18e43cb 100644 --- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild +++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild @@ -12,7 +12,7 @@ MY_PV="$(delete_all_version_separators $(get_version_component_range 1-2))" MY_PATCH="20120106" MY_P="${PN}-v${MY_PV}-linux" -DESCRIPTION="Predicts both the backbone and side chain 1H, 13C and 15N chemical shifts for proteins" +DESCRIPTION="Predicts of backbone and side chain 1H, 13C and 15N CS for proteins" HOMEPAGE="http://shiftx2.wishartlab.com/"; SRC_URI="http://shiftx2.wishartlab.com/download/${MY_P}-${MY_PATCH}.tgz"; diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild index f28e0fb..081c944 100644 --- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild +++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit java-pkg-opt-2 -DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts" +DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts" HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"; SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild index f28e0fb..081c944 100644 --- a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild +++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit java-pkg-opt-2 -DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts" +DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts" HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"; SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" diff --git a/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild b/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild index c0cc917..94fabb2 100644 --- a/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild +++ b/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild @@ -11,7 +11,7 @@ inherit distutils-r1 MY_PN=${PN//_/.} MY_P=${P//_/.} -DESCRIPTION="CDMS handler for Pydap server that supports netCDF, HDF, GrADS/GRIB, or PCMDI DRS" +DESCRIPTION="CDMS handler for Pydap server" HOMEPAGE="http://pydap.org/handlers.html#cdms"; SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz" diff --git a/sci-libs/asl/asl-0.1.7.ebuild b/sci-libs/asl/asl-0.1.7.ebuild index cdec05f..f698a05 100644 --- a/sci-libs/asl/asl-0.1.7.ebuild +++ b/sci-libs/asl/asl-0.1.7.ebuild @@ -10,7 +10,7 @@ CMAKE_MAKEFILE_GENERATOR="${CMAKE_MAKEFILE_GENERATOR:-ninja}" inherit cmake-utils -DESCRIPTION="Advanced Simulation Library - hardware accelerated multiphysics simulation platform" +DESCRIPTION="Hardware accelerated multiphysics simulation platform" HOMEPAGE="http://asl.org.il/"; SRC_URI="https://github.com/AvtechScientific/${MY_PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" diff --git a/sci-libs/asl/asl-9999.ebuild b/sci-libs/asl/asl-9999.ebuild index 81ecd1d..3f4b64e 100644 --- a/sci-libs/asl/asl-9999.ebuild +++ b/sci-libs/asl/asl-9999.ebuild @@ -10,7 +10,7 @@ CMAKE_MAKEFILE_GENERATOR="${CMAKE_MAKEFILE_GENERATOR:-ninja}" inherit cmake-utils git-r3 -DESCRIPTION="Advanced Simulation Library - hardware accelerated multiphysics simulation platform" +DESCRIPTION="Hardware accelerated multiphysics simulation platform" HOMEPAGE="http://asl.org.il/"; SRC_URI="" EGIT_REPO_URI="git://github.com/AvtechScientific/${MY_PN}.git" diff --git a/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild b/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild index 076a4a9..f44e0f4 100644 --- a/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild +++ b/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild @@ -12,7 +12,7 @@ INTEL_SINGLE_ARCH=false inherit intel-sdp -DESCRIPTION="Intel Integrated Performance Primitive library for multimedia and data processing" +DESCRIPTION="Intel Integrated Performance Primitive library" HOMEPAGE="http://software.intel.com/en-us/articles/intel-ipp/"; IUSE="" diff --git a/sci-mathematics/apron/apron-0.9.10-r1.ebuild b/sci-mathematics/apron/apron-0.9.10-r1.ebuild index 622c06b..21d7f01 100644 --- a/sci-mathematics/apron/apron-0.9.10-r1.ebuild +++ b/sci-mathematics/apron/apron-0.9.10-r1.ebuild @@ -6,7 +6,7 @@ EAPI="5" inherit eutils toolchain-funcs -DESCRIPTION="Static analysis of the numerical variables of a program by Abstract Interpretation" +DESCRIPTION="Static analysis of the numerical variables by Abstract Interpretation" HOMEPAGE="http://apron.cri.ensmp.fr/library/"; SRC_URI="http://apron.cri.ensmp.fr/library/${P}.tgz"; diff --git a/sci-misc/elmer-gui/elmer-gui-9999.ebuild b/sci-misc/elmer-gui/elmer-gui-9999.ebuild index b33a150..6db93d0 100644 --- a/sci-misc/elmer-gui/elmer-gui-9999.ebuild +++ b/sci-misc/elmer-gui/elmer-gui-9999.ebuild @@ -11,7 +11,7 @@ inherit autotools eutils qt4-r2 subversion python-single-r1 versionator ELMER_ROOT="elmerfem" MY_PN=ElmerGUI -DESCRIPTION="a collection of finite element programs, libraries, and visualization tools, New Elmer pre-processor" +DESCRIPTION="Finite element programs, libraries, visualization tools" HOMEPAGE="http://www.csc.fi/english/pages/elmer"; SRC_URI="" ESVN_REPO_URI="https://elmerfem.svn.sourceforge.net/svnroot/elmerfem/trunk/${MY_PN}"; diff --git a/sci-misc/mitlm/mitlm-0.4.1.ebuild b/sci-misc/mitlm/mitlm-0.4.1.ebuild index a1d3e74..c343d16 100644 --- a/sci-misc/mitlm/mitlm-0.4.1.ebuild +++ b/sci-misc/mitlm/mitlm-0.4.1.ebuild @@ -6,7 +6,7 @@ EAPI="5" inherit autotools -DESCRIPTION="A set of tools designed for the efficient estimation of statistical n-gram language models" +DESCRIPTION="Tools designed for efficient estimation of statistical n-gram language models" HOMEPAGE="https://github.com/mitlm/mitlm"; SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${PN}_${PV}.tar.gz -> ${P}.tar.gz" diff --git a/sci-physics/abinit/abinit-7.10.4.ebuild b/sci-physics/abinit/abinit-7.10.4.ebuild index ed16815..48c31f3 100644 --- a/sci-physics/abinit/abinit-7.10.4.ebuild +++ b/sci-physics/abinit/abinit-7.10.4.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit autotools-utils eutils flag-o-matic fortran-2 multilib python-single-r1 toolchain-funcs -DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory" +DESCRIPTION="Total energy, charge density and electronic structure using DFT" HOMEPAGE="http://www.abinit.org/"; SRC_URI="http://ftp.abinit.org/${P}.tar.gz"; diff --git a/sci-physics/abinit/abinit-7.4.2-r1.ebuild b/sci-physics/abinit/abinit-7.4.2-r1.ebuild index 51f7ee7..45b7caa 100644 --- a/sci-physics/abinit/abinit-7.4.2-r1.ebuild +++ b/sci-physics/abinit/abinit-7.4.2-r1.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit autotools-utils eutils flag-o-matic fortran-2 multilib python-single-r1 toolchain-funcs -DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory" +DESCRIPTION="Total energy, charge density and electronic structure using DFT" HOMEPAGE="http://www.abinit.org/"; SRC_URI="http://ftp.abinit.org/${P}.tar.gz"; diff --git a/sci-physics/abinit/abinit-7.6.4-r1.ebuild b/sci-physics/abinit/abinit-7.6.4-r1.ebuild index 61ba323..6dd7323 100644 --- a/sci-physics/abinit/abinit-7.6.4-r1.ebuild +++ b/sci-physics/abinit/abinit-7.6.4-r1.ebuild @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit autotools-utils eutils flag-o-matic fortran-2 multilib python-single-r1 toolchain-funcs -DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory" +DESCRIPTION="Total energy, charge density and electronic structure using DFT" HOMEPAGE="http://www.abinit.org/"; SRC_URI="http://ftp.abinit.org/${P}.tar.gz"; diff --git a/sci-physics/mc-tester/mc-tester-1.25.0.ebuild b/sci-physics/mc-tester/mc-tester-1.25.0.ebuild index 78eff0e..84b7cd9 100644 --- a/sci-physics/mc-tester/mc-tester-1.25.0.ebuild +++ b/sci-physics/mc-tester/mc-tester-1.25.0.ebuild @@ -8,7 +8,7 @@ inherit eutils MYPN=MC-TESTER -DESCRIPTION="A universal tool for comparisons of Monte Carlo predictions in High Energy Physics" +DESCRIPTION="Comparisons of Monte Carlo predictions in High Energy Physics" HOMEPAGE="http://mc-tester.web.cern.ch/MC-TESTER/"; SRC_URI="http://mc-tester.web.cern.ch/MC-TESTER/${MYPN}-${PV}.tar.gz"; LICENSE="CPC GPL-2+" diff --git a/sci-physics/openmx/openmx-3.6.ebuild b/sci-physics/openmx/openmx-3.6.ebuild index 978d5f3..02176eb 100644 --- a/sci-physics/openmx/openmx-3.6.ebuild +++ b/sci-physics/openmx/openmx-3.6.ebuild @@ -6,7 +6,7 @@ EAPI=5 inherit eutils multilib toolchain-funcs -DESCRIPTION="Material eXplorer using DFT, NC pseudopotentials, and pseudo-atomic localized basis functions" +DESCRIPTION="Material eXplorer" HOMEPAGE="http://www.openmx-square.org/"; SRC_URI=" http://www.openmx-square.org/${PN}${PV}.tar.gz diff --git a/sci-physics/openmx/openmx-3.7.8.ebuild b/sci-physics/openmx/openmx-3.7.8.ebuild index 3468aa1..a227c0b 100644 --- a/sci-physics/openmx/openmx-3.7.8.ebuild +++ b/sci-physics/openmx/openmx-3.7.8.ebuild @@ -8,7 +8,7 @@ inherit eutils multilib toolchain-funcs fortran-2 PATCHDATE="14Feb17" -DESCRIPTION="Material eXplorer using DFT, NC pseudopotentials, and pseudo-atomic localized basis functions" +DESCRIPTION="Material eXplorer" HOMEPAGE="http://www.openmx-square.org/"; SRC_URI=" http://www.openmx-square.org/${PN}${PV%.[0-9]}.tar.gz
