commit: 9d87880e06967309bde9877094080884b7d9c9ec Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sat Feb 4 21:02:10 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sat Feb 4 21:07:13 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9d87880e
sci-libs/shogun: Remove old Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3782 sci-libs/shogun/Manifest | 1 - sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch | 190 --------------------- .../files/shogun-4.1.0-fix-buildsystem.patch | 81 --------- sci-libs/shogun/shogun-4.1.0.ebuild | 129 -------------- 4 files changed, 401 deletions(-) diff --git a/sci-libs/shogun/Manifest b/sci-libs/shogun/Manifest index b92de5f..b827f90 100644 --- a/sci-libs/shogun/Manifest +++ b/sci-libs/shogun/Manifest @@ -1,3 +1,2 @@ -DIST shogun-4.1.0.tar.bz2 2908955 SHA256 0eb313a95606edee046768a4577d63f32f7ccce340bed7bf0ff0d69225567185 SHA512 01950d5186a94735df5331752e1b97a5464015973ddba38a70bc977f9872b3aad02b162ae87919631cce56d1f10b0bea1fa7b463bf959816e5a15a726214f52a WHIRLPOOL 300bd0d887fe8ee4a1ac2aca7f3fbaebd4344dcffe2b20f9b5bb05e83d6973e8a98e54a216d99329c03eea2c02666c557a3c50ff7e11556298d119b8c262f762 DIST shogun-5.0.0.tar.bz2 2448509 SHA256 e82c6a58db9db6624192b018750b0e41f793481791fdc9a6d328bf278d0ae70d SHA512 fa8d9dee4596acce12022540a6927cbdb62e08f8468c8be3790de07ebf3a53055032bcc532b28334ca83284c38f2b0153602634f12bafe4019acb9121b9ff236 WHIRLPOOL 532058c44680909f3717785035c13fb3cf48efec22924101975d80990cb2a9e151814c673ad1a03fa33e363abbaf21fc9edc99d7d25686cc67e907547217bf69 DIST shogun-data-0.9.tar.bz2 287533841 SHA256 691dd37ccc9bdd4f56d6b7a8e061e80567c241219d70210f8148bc4b7b815559 SHA512 ab501640e2db650603899c857866b451fac5c7bbbc7b4ef98559581928869cea49aa326dfca1bb398eee7ebc8843dcc8ee3105c9f462718f1af672aac6b9340a WHIRLPOOL 19aa7a6d84be9ac7d8aaf7fb12747e17e0ba5a7ec8770b83cc1833b07cd1c6c397684a96eb8ebe709d544967ffaf23bcfbeea52dc8ddedf487fcf54a6d2b3ef7 diff --git a/sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch b/sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch deleted file mode 100644 index ed57cec..00000000 --- a/sci-libs/shogun/files/shogun-4.1.0-eigen-3.3.patch +++ /dev/null @@ -1,190 +0,0 @@ -From 57cd0958b153accf12f535ab9406dc8511bf22ec Mon Sep 17 00:00:00 2001 -From: Viktor Gal <[email protected]> -Date: Wed, 18 May 2016 06:35:28 +0200 -Subject: [PATCH] Fixing eigen 3.3 related errors - -porting fix for #3141 from lisitsyn/tapkee@7c74473d12809e4122527b6e003c74a942d8a25c -fix #3140: provide a workaround for the eigen bug for calculating log of mapped matrices ---- - src/shogun/lib/tapkee/defines.hpp | 4 +-- - src/shogun/mathematics/eigen3.h | 7 +++++ - .../logdet/opfunc/DenseMatrixExactLog.cpp | 5 ++++ - .../SerialComputationEngine_unittest.cc | 5 ++++ - .../linalg/DenseExactLogJob_unittest.cc | 5 ++++ - .../linalg/RationalApproximation_unittest.cc | 10 ++++++++ - .../linalg/SparseMatrixOperator_unittest.cc | 30 ++++++++++++---------- - 7 files changed, 51 insertions(+), 15 deletions(-) - -diff --git a/src/shogun/lib/tapkee/defines.hpp b/src/shogun/lib/tapkee/defines.hpp -index fd02636..1be45fe 100644 ---- a/src/shogun/lib/tapkee/defines.hpp -+++ b/src/shogun/lib/tapkee/defines.hpp -@@ -49,12 +49,12 @@ namespace tapkee - TapkeeOutput(const tapkee::DenseMatrix& e, const tapkee::ProjectingFunction& p) : - embedding(), projection(p) - { -- embedding.swap(e); -+ embedding = e; - } - TapkeeOutput(const TapkeeOutput& that) : - embedding(), projection(that.projection) - { -- this->embedding.swap(that.embedding); -+ this->embedding = that.embedding; - } - tapkee::DenseMatrix embedding; - tapkee::ProjectingFunction projection; -diff --git a/src/shogun/mathematics/eigen3.h b/src/shogun/mathematics/eigen3.h -index 0fb8522..734be6c 100644 ---- a/src/shogun/mathematics/eigen3.h -+++ b/src/shogun/mathematics/eigen3.h -@@ -61,6 +61,13 @@ - - #endif //EIGEN_VERSION_AT_LEAST(3,0,93) - -+#if ((EIGEN_WORLD_VERSION == 3) && (EIGEN_MAJOR_VERSION == 2) && \ -+ ((EIGEN_MINOR_VERSION == 91) || (EIGEN_MINOR_VERSION == 92))) -+ // Regression has been introduced to eigen develop (3.3alpha1+): -+ // http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1229 -+ // until this is not fixed we need to copy the matrix and calculate the log -+ #define EIGEN_WITH_LOG_BUG_1229 1 -+#endif - namespace shogun - { - template<class T> class SGSparseMatrix; -diff --git a/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp b/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp -index a7918e6..1002a6c 100644 ---- a/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp -+++ b/src/shogun/mathematics/linalg/ratapprox/logdet/opfunc/DenseMatrixExactLog.cpp -@@ -62,7 +62,12 @@ void CDenseMatrixExactLog::precompute() - Map<MatrixXd> mat(m.matrix, m.num_rows, m.num_cols); - SGMatrix<float64_t> log_m(m.num_rows, m.num_cols); - Map<MatrixXd> log_mat(log_m.matrix, log_m.num_rows, log_m.num_cols); -+#if EIGEN_WITH_LOG_BUG_1229 -+ MatrixXd tmp = mat; -+ log_mat=tmp.log(); -+#else - log_mat=mat.log(); -+#endif - - // the log(C) is also a linear operator here - // reset the operator of this function with log(C) -diff --git a/tests/unit/lib/computation/SerialComputationEngine_unittest.cc b/tests/unit/lib/computation/SerialComputationEngine_unittest.cc -index c41a69a..7f96df1 100644 ---- a/tests/unit/lib/computation/SerialComputationEngine_unittest.cc -+++ b/tests/unit/lib/computation/SerialComputationEngine_unittest.cc -@@ -40,7 +40,12 @@ TEST(SerialComputationEngine, dense_log_det) - mat(1,1)=3.0; - Map<MatrixXd> m(mat.matrix, mat.num_rows, mat.num_cols); - Map<MatrixXd> log_m(log_mat.matrix, log_mat.num_rows, log_mat.num_cols); -+#if EIGEN_WITH_LOG_BUG_1229 -+ MatrixXd tmp = m; -+ log_m=tmp.log(); -+#else - log_m=m.log(); -+#endif - - // create linear operator and aggregator - CDenseMatrixOperator<float64_t>* log_op=new CDenseMatrixOperator<float64_t>(log_mat); -diff --git a/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc b/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc -index a5a12cf..60daf40 100644 ---- a/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc -+++ b/tests/unit/mathematics/linalg/DenseExactLogJob_unittest.cc -@@ -38,7 +38,12 @@ TEST(DenseExactLogJob, log_det) - mat(1,1)=3.0; - Map<MatrixXd> m(mat.matrix, mat.num_rows, mat.num_cols); - Map<MatrixXd> log_m(log_mat.matrix, log_mat.num_rows, log_mat.num_cols); -+#if EIGEN_WITH_LOG_BUG_1229 -+ MatrixXd tmp = m; -+ log_m=tmp.log(); -+#else - log_m=m.log(); -+#endif - - // create linear operator and aggregator - CDenseMatrixOperator<float64_t>* log_op=new CDenseMatrixOperator<float64_t>(log_mat); -diff --git a/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc b/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc -index f401d06..682ed66 100644 ---- a/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc -+++ b/tests/unit/mathematics/linalg/RationalApproximation_unittest.cc -@@ -182,7 +182,12 @@ TEST(RationalApproximation, trace_accuracy) - #if EIGEN_VERSION_AT_LEAST(3,1,0) - // compute the trace of log(m) using Eigen3 that uses Schur-Parlett algorithm - Map<MatrixXd> eig_m(m.matrix, m.num_rows, m.num_cols); -+#if EIGEN_WITH_LOG_BUG_1229 -+ MatrixXd tmp = eig_m; -+ float64_t trace_log_m=tmp.log().diagonal().sum(); -+#else - float64_t trace_log_m=eig_m.log().diagonal().sum(); -+#endif - #else - float64_t trace_log_m=-11.51292546497021618279; - #endif // EIGEN_VERSION_AT_LEAST(3,1,0) -@@ -364,7 +369,12 @@ TEST(RationalApproximation, trace_accuracy_cg_m) - #if EIGEN_VERSION_AT_LEAST(3,1,0) - // compute the trace of log(m) using Eigen3 that uses Schur-Parlett algorithm - Map<MatrixXd> eig_m(m.matrix, m.num_rows, m.num_cols); -+#if EIGEN_WITH_LOG_BUG_1229 -+ MatrixXd tmp = eig_m; -+ float64_t trace_log_m=tmp.log().diagonal().sum(); -+#else - float64_t trace_log_m=eig_m.log().diagonal().sum(); -+#endif - #else - float64_t trace_log_m=-11.51292546497021618279; - #endif // EIGEN_VERSION_AT_LEAST(3,1,0) -diff --git a/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc b/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc -index 4d30724..9d171cc 100644 ---- a/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc -+++ b/tests/unit/mathematics/linalg/SparseMatrixOperator_unittest.cc -@@ -219,33 +219,37 @@ TEST(SparseMatrixOperator, get_set_diagonal_realloc_complex128) - - TEST(SparseMatrixOperator, get_sparsity_structure) - { -- const int size=9; -- const int max_pow=10; -+ const int32_t size=9; -+ const int32_t max_pow=10; - -- SGMatrix<double> m(size, size); -+ SGMatrix<float64_t> m(size, size); - - m.set_const(0.0); -- for (int i=0; i<size; ++i) -+ for (int32_t i=0; i<size; ++i) - m(i,i)=2.0; -- for (int i=0; i<size; i+=4) -+ for (int32_t i=0; i<size; i+=4) - m(i,size-1)=2.0; -- for (int i=0; i<size; i+=4) -+ for (int32_t i=0; i<size; i+=4) - m(size-1,i)=2.0; - -- CSparseFeatures<double> feat(m); -- SGSparseMatrix<double> sm=feat.get_sparse_feature_matrix(); -- CSparseMatrixOperator<double> op(sm); -+ CSparseFeatures<float64_t> feat(m); -+ SGSparseMatrix<float64_t> sm=feat.get_sparse_feature_matrix(); -+ CSparseMatrixOperator<float64_t> op(sm); - CSparseMatrixOperator<bool>* b_op - =static_cast<CSparseMatrixOperator<bool>*>(op); - -- SparseMatrix<bool, RowMajor, int> sp -+ SparseMatrix<bool, RowMajor, int32_t> sp - =EigenSparseUtil<bool>::toEigenSparse(b_op->get_matrix_operator()); -- SparseMatrix<double, RowMajor, int> sm2 -- =EigenSparseUtil<double>::toEigenSparse(sm); -+ SparseMatrix<float64_t, RowMajor, int32_t> sm2 -+ =EigenSparseUtil<float64_t>::toEigenSparse(sm); - - // compute direct matrix power and then the sparsity structure -- for (int i=2; i<=max_pow; ++i) -+ for (int32_t i=2; i<=max_pow; ++i) -+#if EIGEN_VERSION_AT_LEAST(3,2,91) -+ sp=(sp.cast<float64_t>()*sm2).cast<bool>(); -+#else - sp=sp*sm2; -+#endif - - int32_t* outerIndexPtr=const_cast<int32_t*>(sp.outerIndexPtr()); - int32_t* innerIndexPtr=const_cast<int32_t*>(sp.innerIndexPtr()); diff --git a/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch b/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch deleted file mode 100644 index e244c94..00000000 --- a/sci-libs/shogun/files/shogun-4.1.0-fix-buildsystem.patch +++ /dev/null @@ -1,81 +0,0 @@ -Remove CFLAGS/CXXFLAGS setting which is not desired in Gentoo - ---- shogun-4.1.0/cmake/FindAtlas.cmake -+++ shogun-4.1.0/cmake/FindAtlas.cmake -@@ -20,10 +20,10 @@ - endif() - unset(CMAKE_REQUIRED_LIBRARIES CACHE) - else() -- find_file(ATLAS_LAPACK liblapack.so.3 PATHS /usr/lib/atlas /usr/lib64/atlas) -- find_library(ATLAS_LAPACK NAMES lapack) -- set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES} ${ATLAS_CBLAS}) -- check_library_exists("${ATLAS_LAPACK}" clapack_dpotrf "" FOUND_CLAPACK) -+ # find_file(ATLAS_LAPACK liblapack.so.3 PATHS /usr/lib/atlas /usr/lib64/atlas) -+ # find_library(ATLAS_LAPACK NAMES lapack) -+ # set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES} ${ATLAS_CBLAS}) -+ check_library_exists("${ATLAS_LIBRARIES}" clapack_dpotrf "" FOUND_CLAPACK) - if(NOT FOUND_CLAPACK) - unset(ATLAS_LAPACK CACHE) - endif() ---- shogun-4.1.0/CMakeLists.txt -+++ shogun-4.1.0/CMakeLists.txt -@@ -23,15 +23,6 @@ - SET(EIGEN_VERSION_MINIMUM 3.1.2) - SET(VIENNACL_VERSION_MINIMUM 1.5.0) - --# Store system's or distribution's C[XX]FLAGS. --SET(SYSTEM_C_FLAGS "${CMAKE_C_FLAGS}") --SET(SYSTEM_CXX_FLAGS "${CMAKE_CXX_FLAGS}") --STRING(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE_UC) --IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- SET(CMAKE_C_FLAGS "") -- SET(CMAKE_CXX_FLAGS "") --ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- - # CCACHE - OPTION(ENABLE_CCACHE "Enable ccache for compilation" ON) - FIND_PACKAGE(CCache) -@@ -145,20 +136,8 @@ - SET(COMPILER_WARNINGS "-Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated") - ENDIF() - --IF(CMAKE_COMPILER_IS_GNUCXX) -- SET(RELEASE_COMPILER_FLAGS "-fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -mfpmath=sse") --ELSEIF("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang") -- SET(RELEASE_COMPILER_FLAGS "-funroll-loops") --ENDIF() --SET(SWIG_CXX_COMPILER_FLAGS "-O0 -g") - SET(CMAKE_C_FLAGS "${COMPILER_WARNINGS} ${CMAKE_C_FLAGS}") - SET(CMAKE_CXX_FLAGS "${COMPILER_WARNINGS} ${CMAKE_CXX_FLAGS}") --SET(CMAKE_C_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}") --SET(CMAKE_CXX_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}") --SET(CMAKE_C_FLAGS_DISTRIBUTION "-O2") --SET(CMAKE_CXX_FLAGS_DISTRIBUTION "-O2") --SET(CMAKE_C_FLAGS_DEBUG "-g") --SET(CMAKE_CXX_FLAGS_DEBUG "-g") - - OPTION(ENABLE_COVERAGE "Enable code coverage" OFF) - IF(ENABLE_COVERAGE) -@@ -881,21 +860,7 @@ - OPTION(USE_SWIG_DIRECTORS "Enable SWIG director classes" OFF) - - # Respect system's or distribution's C[XX]FLAGS. --OPTION(SWIG_WITH_SYSTEM_CFLAGS "Enable system's C[XX]FLAGS for compilation of swig-binaries" ON) -- --IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${SYSTEM_C_FLAGS}") -- SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${SYSTEM_CXX_FLAGS}") --ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- --IF(SWIG_WITH_SYSTEM_CFLAGS) -- SET(SWIG_CXX_COMPILER_FLAGS "${SWIG_CXX_COMPILER_FLAGS} ${SYSTEM_CXX_FLAGS}") --ENDIF(SWIG_WITH_SYSTEM_CFLAGS) -- --OPTION(REDUCE_SWIG_DEBUG "Reduce debuginfo when compiling interfaces" OFF) --IF(REDUCE_SWIG_DEBUG) -- SET(SWIG_CXX_COMPILER_FLAGS "${SWIG_CXX_COMPILER_FLAGS} -g1") --ENDIF(REDUCE_SWIG_DEBUG) -+SET(SWIG_CXX_COMPILER_FLAGS "${CMAKE_CXX_FLAGS}") - - # python modular - IF (PythonModular OR PythonStatic) diff --git a/sci-libs/shogun/shogun-4.1.0.ebuild b/sci-libs/shogun/shogun-4.1.0.ebuild deleted file mode 100644 index 3f31f9d..00000000 --- a/sci-libs/shogun/shogun-4.1.0.ebuild +++ /dev/null @@ -1,129 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 - -PYTHON_COMPAT=( python2_7 python3_{4,5} ) - -inherit cmake-utils flag-o-matic python-single-r1 toolchain-funcs versionator - -MYPV=$(get_version_component_range 1-2) -MYPD=${PN}-data-0.9 - -DESCRIPTION="Large Scale Machine Learning Toolbox" -HOMEPAGE="http://shogun-toolbox.org/"; -SRC_URI=" - ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2 - test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 ) - examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )" - -LICENSE="GPL-3 free-noncomm" -SLOT="0/16" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples lua mono octave python R ruby static-libs test" - -REQUIRED_USE=" - python? ( ${PYTHON_REQUIRED_USE} ) - test? ( python )" - -RDEPEND=" - app-arch/bzip2:= - app-arch/gzip:= - app-arch/lzma:= - app-arch/snappy:= - dev-libs/lzo:= - >=dev-cpp/eigen-3.1 - dev-libs/json-c:= - dev-libs/libxml2:= - dev-libs/protobuf:= - net-misc/curl:= - sci-libs/arpack:= - sci-libs/arprec:= - sci-libs/colpack:= - sci-libs/hdf5:= - sci-libs/nlopt:= - sci-mathematics/glpk:= - sci-mathematics/lpsolve:= - sys-libs/readline:0 - sys-libs/zlib:= - virtual/blas - virtual/cblas - virtual/lapack - lua? ( dev-lang/lua:0 ) - mono? ( dev-lang/mono ) - octave? ( <sci-mathematics/octave-3.8.0[hdf5] ) - python? ( dev-python/numpy[${PYTHON_USEDEP}] ) - R? ( dev-lang/R ) - ruby? ( dev-ruby/narray )" - -DEPEND="${RDEPEND} - virtual/pkgconfig - doc? ( app-doc/doxygen[dot] ) - lua? ( >=dev-lang/swig-2.0.4 ) - mono? ( >=dev-lang/swig-2.0.4 ) - octave? ( >=dev-lang/swig-2.0.4 ) - python? ( >=dev-lang/swig-2.0.4 test? ( sci-libs/scipy ) ) - R? ( >=dev-lang/swig-2.0.4 ) - ruby? ( >=dev-lang/swig-2.0.4 ) - test? ( - dev-python/jinja[${PYTHON_USEDEP}] - dev-cpp/gmock - )" - -# javamodular needs jblas (painful to package properly) -# permodular work in progress (as 3.2.0) -# could actually support multiple pythons, multiple rubys -# feel free to do work for it - -PATCHES=( - "${FILESDIR}"/${P}-fix-buildsystem.patch - "${FILESDIR}"/${P}-remove-C-linkage.patch - "${FILESDIR}"/${P}-eigen-3.3.patch -) - -pkg_setup() { - use python && python-single-r1_pkg_setup -} - -src_configure() { - export ATLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas lapack)" - export CBLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas)" - export ATLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas cblas lapack)" - export LAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs lapack)" - - append-cppflags "$($(tc-getPKG_CONFIG) --cflags cblas)" - - local mycmakeargs=( - -DCMAKE_SKIP_INSTALL_RPATH=ON - -DCMAKE_SKIP_RPATH=ON - -DBUNDLE_ARPREC=OFF - -DBUNDLE_COLPACK=OFF - -DBUNDLE_EIGEN=OFF - -DBUNDLE_JSON=OFF - -DBUNDLE_NLOPT=OFF - -DENABLE_COVERAGE=OFF - -DJavaModular=OFF - -DPerlModular=OFF - -DLIB_INSTALL_DIR=$(get_libdir) - -DLuaModular="$(usex lua)" - -DCSharpModular="$(usex mono)" - -DOctaveModular="$(usex octave)" - -DOctaveStatic="$(usex octave)" - -DPythonModular="$(usex python)" - -DPythonStatic="$(usex python)" - -DRModular="$(usex R)" - -DRStatic="$(usex R)" - -DRubyModular="$(usex ruby)" - -DENABLE_TESTING="$(usex test)" - -DBUILD_EXAMPLES="$(usex examples)" - ) - cmake-utils_src_configure - # gentoo bug #302621 - has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc -} - -src_compile() { - cmake-utils_src_compile - use doc && emake -C "${BUILD_DIR}"/doc -}
