commit: c18962d9d1d8cb9c13caafaaaa7b8204c2b4a885 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sun Jan 29 14:03:22 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Jan 29 14:03:22 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c18962d9
sci-biology/breakdancer: QA fixes Bump to6 EAPI drop non active code add missing slot operator Convert to perl-functions.eclass Shorten DESCRIPTION Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/breakdancer/breakdancer-9999.ebuild | 28 ++++++++----------------- sci-biology/breakdancer/metadata.xml | 2 +- 2 files changed, 10 insertions(+), 20 deletions(-) diff --git a/sci-biology/breakdancer/breakdancer-9999.ebuild b/sci-biology/breakdancer/breakdancer-9999.ebuild index 10d2adb..32688e5 100644 --- a/sci-biology/breakdancer/breakdancer-9999.ebuild +++ b/sci-biology/breakdancer/breakdancer-9999.ebuild @@ -1,33 +1,23 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 -inherit cmake-utils +inherit cmake-utils git-r3 perl-functions -[ "$PV" == "9999" ] && inherit git-r3 - -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit perl-module eutils toolchain-funcs - -DESCRIPTION="Genome-wide detection of structural variants from next generation paired-end sequencing reads" +DESCRIPTION="Genome-wide detection of structural variants from paired-end sequencing reads" HOMEPAGE="http://gmt.genome.wustl.edu/packages/breakdancer"; -if [ "$PV" == "9999" ]; then - EGIT_REPO_URI="https://github.com/genome/breakdancer.git"; - KEYWORDS="" -else - # TODO: fish out 1.3.6 version from github - SRC_URI="http://sourceforge.net/projects/breakdancer/files/breakdancer-1.1.2_2013_03_08.zip"; - KEYWORDS="" -fi +EGIT_REPO_URI="https://github.com/genome/breakdancer.git"; LICENSE="GPL-3" SLOT="0" IUSE="" +KEYWORDS="" # http://search.cpan.org/~callahan/Math-CDF-0.1/CDF.pm -DEPEND="dev-lang/perl +DEPEND=" + dev-lang/perl dev-perl/Statistics-Descriptive - sci-biology/samtools" + sci-biology/samtools:0" RDEPEND="${DEPEND}" diff --git a/sci-biology/breakdancer/metadata.xml b/sci-biology/breakdancer/metadata.xml index 1d67411..138cb77 100644 --- a/sci-biology/breakdancer/metadata.xml +++ b/sci-biology/breakdancer/metadata.xml @@ -5,7 +5,7 @@ <email>[email protected]</email> <name>Martin Mokrejs</name> </maintainer> -<maintainer type="project"> + <maintainer type="project"> <email>[email protected]</email> <name>Gentoo Biology Project</name> </maintainer>
