commit: c38274779a20385ad70d5c2aa2dac34d8525868d Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sun Jan 29 13:44:25 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Jan 29 13:44:25 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3827477
sci-biology/SEECER: QA fixes Bump to6 EAPI drop non active code add missing slot operator Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/SEECER/SEECER-0.1.3-r2.ebuild | 23 +++++++++++------------ sci-biology/SEECER/metadata.xml | 2 +- 2 files changed, 12 insertions(+), 13 deletions(-) diff --git a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild index 8d8e919..f2b5a67 100644 --- a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild +++ b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild @@ -1,41 +1,40 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 inherit eutils DESCRIPTION="SEquencing Error Corrector for RNA-Seq reads" HOMEPAGE="http://sb.cs.cmu.edu/seecer/"; -if [ "$PV" == "9999" ]; then - EGIT_REPO_URI="https://github.com/haisonle/SEECER.git"; - KEYWORDS="" -else - SRC_URI=" +SRC_URI=" http://sb.cs.cmu.edu/seecer/downloads/"${P}".tar.gz http://sb.cs.cmu.edu/seecer/downloads/manual.pdf -> "${PN}"-manual.pdf" - KEYWORDS="~amd64" -fi LICENSE="GPL-3" SLOT="0" IUSE="" +KEYWORDS="~amd64" # although has bundled jellyfish-1.1.11 copy it just calls the executable during runtime # seems jellyfish-2 does not accept same commandline arguments DEPEND=" - sci-libs/gsl - sci-biology/seqan" + sci-libs/gsl:0= + sci-biology/seqan:0=" RDEPEND="${DEPEND} =sci-biology/jellyfish-1.1.11" S="${S}"/SEECER +PATCHES=( + "${FILESDIR}"/remove-hardcoded-paths.patch +) + src_prepare(){ # http://seecer-rna-read-error-correction-mailing-list.21961.x6.nabble.com/Segmentation-fault-in-step-4-td41.html cp -p "${FILESDIR}"/replace_ids.cc "${S}"/src/ || die - epatch "${FILESDIR}"/remove-hardcoded-paths.patch + default } src_install(){ diff --git a/sci-biology/SEECER/metadata.xml b/sci-biology/SEECER/metadata.xml index 1699e58..f68a1b6 100644 --- a/sci-biology/SEECER/metadata.xml +++ b/sci-biology/SEECER/metadata.xml @@ -5,7 +5,7 @@ <email>[email protected]</email> <name>Martin Mokrejs</name> </maintainer> -<maintainer type="project"> + <maintainer type="project"> <email>[email protected]</email> <name>Gentoo Biology Project</name> </maintainer>
