commit: 4ee5e3f90785b4a1571df2c0d6028a542557977e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 10 12:16:12 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 10 12:16:12 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4ee5e3f9
sci-biology/plinkseq: remove dangling symlinks
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/plinkseq/plinkseq-0.10.ebuild | 1 +
sci-biology/plinkseq/plinkseq-9999.ebuild | 1 +
2 files changed, 2 insertions(+)
diff --git a/sci-biology/plinkseq/plinkseq-0.10.ebuild
b/sci-biology/plinkseq/plinkseq-0.10.ebuild
index 2934db5..b49f5b7 100644
--- a/sci-biology/plinkseq/plinkseq-0.10.ebuild
+++ b/sci-biology/plinkseq/plinkseq-0.10.ebuild
@@ -28,6 +28,7 @@ src_prepare(){
sed -e "s/gcc/$(tc-getCC)/g;s/g++/$(tc-getCXX)/g;s/-O3/${CFLAGS}/g" -i
config_defs.Makefile || die
sed -e "s/= -static/=/g" -i config_defs.Makefile || die
rm -rf sources/ext/protobuf-* || die
+ rm sources/ext/protobuf sources/ext/sources/include/google || die
rm -rf sources/mongoose || die
sed -e 's@^all:.*@all: # skipping compilation of bundled
dev-libs/protobuf@' -i sources/ext/Makefile || die
# TODO: fix also
sources/ext/sources/include/DUMMY/include/google/protobuf/compiler/plugin.proto
causing:
diff --git a/sci-biology/plinkseq/plinkseq-9999.ebuild
b/sci-biology/plinkseq/plinkseq-9999.ebuild
index 939a2b8..c17fb39 100644
--- a/sci-biology/plinkseq/plinkseq-9999.ebuild
+++ b/sci-biology/plinkseq/plinkseq-9999.ebuild
@@ -29,6 +29,7 @@ src_prepare(){
sed -e "s/gcc/$(tc-getCC)/g;s/g++/$(tc-getCXX)/g;s/-O3/${CFLAGS}/g" -i
config_defs.Makefile || die
sed -e "s/= -static/=/g" -i config_defs.Makefile || die
rm -rf sources/ext/protobuf-* || die
+ rm sources/ext/protobuf sources/ext/sources/include/google || die
rm -rf sources/mongoose || die
sed -e 's@^all:.*@all: # skipping compilation of bundled
dev-libs/protobuf@' -i sources/ext/Makefile || die
find . -name \*.proto | while read f; do \
