jlec 14/05/19 14:13:36 Modified: ChangeLog Added: plink-1.90_pre140514.ebuild Removed: plink-1.07.ebuild Log: sci-biology/plink: Version BUmp, #510716 (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.15 sci-biology/plink/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?rev=1.15&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?rev=1.15&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?r1=1.14&r2=1.15 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v retrieving revision 1.14 retrieving revision 1.15 diff -u -r1.14 -r1.15 --- ChangeLog 11 Mar 2013 16:47:09 -0000 1.14 +++ ChangeLog 19 May 2014 14:13:36 -0000 1.15 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/plink -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.14 2013/03/11 16:47:09 jlec Exp $ +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.15 2014/05/19 14:13:36 jlec Exp $ + +*plink-1.90_pre140514 (19 May 2014) + + 19 May 2014; Justin Lecher <[email protected]> -plink-1.07.ebuild, + +plink-1.90_pre140514.ebuild: + Version BUmp, #510716 11 Mar 2013; Justin Lecher <[email protected]> metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly 1.1 sci-biology/plink/plink-1.90_pre140514.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild?rev=1.1&content-type=text/plain Index: plink-1.90_pre140514.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild,v 1.1 2014/05/19 14:13:36 jlec Exp $ EAPI=5 inherit eutils toolchain-funcs DESCRIPTION="Whole genome association analysis toolset" HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/"; SRC_URI="http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> ${P}.zip" LICENSE="GPL-2" SLOT="0" IUSE="lapack" KEYWORDS="~amd64 ~x86" DEPEND=" app-arch/unzip virtual/pkgconfig" RDEPEND=" sys-libs/zlib lapack? ( virtual/lapack )" S="${WORKDIR}/" # Package collides with net-misc/putty. Renamed to p-link following discussion with Debian. # Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. src_prepare() { use lapack || sed -i '/NO_LAPACK =/s/$/1/' "${S}/Makefile" || die sed \ -e 's:zlib-1.2.8/zlib.h:zlib.h:g' \ -i *.{c,h} || die sed \ -e 's:g++:$(CXX):g' \ -e 's:gcc:$(CC):g' \ -e 's:gfortran:$(FC):g' \ -i Makefile || die tc-export PKG_CONFIG } src_compile() { local blas emake \ CXX=$(tc-getCXX) \ CFLAGS="${CFLAGS}" \ ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \ BLASFLAGS="$(usex lapack "" "$($(tc-getPKG_CONFIG) --libs lapack)")" } src_install() { newbin plink p-link }
