commit: 9574df41e529782826a9e6b32bdbac1678f47875
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 3 08:55:18 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Sep 3 08:55:18 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9574df41
sci-biology/bwa: Version bump to 0.7.15
Package-Manager: portage-2.3.0
sci-biology/bwa/Manifest | 2 +-
sci-biology/bwa/{bwa-0.7.13.ebuild => bwa-0.7.15.ebuild} | 11 +++++------
.../{bwa-0.7.13-Makefile.patch => bwa-0.7.15-Makefile.patch} | 0
3 files changed, 6 insertions(+), 7 deletions(-)
diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest
index 3cf0fb1..5589b91 100644
--- a/sci-biology/bwa/Manifest
+++ b/sci-biology/bwa/Manifest
@@ -1,2 +1,2 @@
DIST bwa-0.7.12.tar.bz2 184599 SHA256
701dcad147ae470d741717a72c369b338df7f80bff4bb8eee8176c66f16d608c SHA512
3ea093b861c1596d20b1ee0336468b66e52bc9f26e3d0bcbba0ddccc7fe9b1af2c7e1ed2a4e1366fe93fec348152becc126d5f4685dae54f05e6c582488b3abd
WHIRLPOOL
4b8651dedf2e09980850e7212fc2a77dc86b06f708af2077cff28cc843858b15825a203e3e02e7728418e9eb539004404f7c4b234c1f65de6a7b7dfe4dcfd1d0
-DIST bwa-0.7.13.tar.bz2 189670 SHA256
559b3c63266e5d5351f7665268263dbb9592f3c1c4569e7a4a75a15f17f0aedc SHA512
37966e914321d17b5a1d4e3a7786abdd9dd476e4dd7aaf924fb0e0726e3827a1414d9ffccc114a1a334943c8dde38273ce5fafdd1b429ab0f3cbf47ddbd6bedf
WHIRLPOOL
86b278b301aa1ff4334c0d78709a61dc034895deb6aa2bd60ee45a595198343e7d60db458c61168b8c61a6ace21db394583b6314a56df3171a151f554c07f769
+DIST bwa-0.7.15.tar.bz2 189806 SHA256
2f56afefa49acc9bf45f12edb58e412565086cc20be098b8bf15ec07de8c0515 SHA512
cb862342aef1042751de55df095b4dac8344d9b41f00b0cca7f748829bf7fba71d15e4c7deaaa255eca6ee6af3ba58b370944ee702150cf17c29fb50ff25fa26
WHIRLPOOL
5d57d37339ff6c68c47ba0147ea21e4faa9a6cbbea2e66130e69bbb19802621ad22ae26889c06000109684961ed9d872605bffd469ddf97af2f1fdca3b8bd316
diff --git a/sci-biology/bwa/bwa-0.7.13.ebuild
b/sci-biology/bwa/bwa-0.7.15.ebuild
similarity index 82%
rename from sci-biology/bwa/bwa-0.7.13.ebuild
rename to sci-biology/bwa/bwa-0.7.15.ebuild
index 2ce3ff3..fab85aa 100644
--- a/sci-biology/bwa/bwa-0.7.13.ebuild
+++ b/sci-biology/bwa/bwa-0.7.15.ebuild
@@ -17,13 +17,12 @@ KEYWORDS="~amd64 ~x86 ~x64-macos"
RDEPEND="dev-lang/perl"
-PATCHES=(
- "${FILESDIR}"/${P}-Makefile.patch
-)
+DOCS=( NEWS.md README-alt.md README.md )
+PATCHES=( "${FILESDIR}"/${P}-Makefile.patch )
-src_prepare() {
- default
+src_configure() {
tc-export CC AR
+ default
}
src_install() {
@@ -34,5 +33,5 @@ src_install() {
exeinto /usr/libexec/${PN}
doexe qualfa2fq.pl xa2multi.pl
- dodoc NEWS.md README-alt.md README.md
+ einstalldocs
}
diff --git a/sci-biology/bwa/files/bwa-0.7.13-Makefile.patch
b/sci-biology/bwa/files/bwa-0.7.15-Makefile.patch
similarity index 100%
rename from sci-biology/bwa/files/bwa-0.7.13-Makefile.patch
rename to sci-biology/bwa/files/bwa-0.7.15-Makefile.patch
