commit: 3d453585d191dca9ce0577865db62270bbcb1842
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Aug 2 14:49:41 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Aug 2 14:49:41 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3d453585
sci-biology/maker: add some comments to the ebuild
Package-Manager: portage-2.3.0
sci-biology/maker/maker-2.31.8.ebuild | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/sci-biology/maker/maker-2.31.8.ebuild
b/sci-biology/maker/maker-2.31.8.ebuild
index 60abb3a..21734c2 100644
--- a/sci-biology/maker/maker-2.31.8.ebuild
+++ b/sci-biology/maker/maker-2.31.8.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -95,6 +95,7 @@ pkg_nofetch() {
einfo "That in turn requires you to register at
http://www.girinst.org/server/RepBase";
einfo "to obtain sci-biology/repeatmasker-libraries data file"
einfo "For execution through openmpi or mpich please read INSTALL file"
+ einfo "Customization typically go into maker_opts.ctl file"
}
src_compile(){
@@ -102,9 +103,15 @@ src_compile(){
./Build install || die
}
+# If you move it, then the executables won’t be able to locate dependencies in
the …/maker/data,
+# …/maker/lib, and …/maker/perl directories. You should really either add the
location of
+# …/maker/bin to you PATH environmental variable or at most soft link the
executables somewhere
+# else using the ‘ln -s’ command.
src_install(){
cd "${WORKDIR}"/maker || die
rm -f bin/fasta_tool # is part of sci-biology/GAL
+ # drop development related accessory script requiring Parallel/MPIcar.pm
+ find . -name mpi_evaluator | xargs rm || die
mv bin/compare bin/compare_gff3_to_chado # rename as agreed by
upstream, will be in maker-3 as well
dobin bin/*
dodoc README INSTALL
