commit: bf1b944dd35395338a376aab9eb3cb7bc29fb24a Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Jul 31 11:05:31 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Jul 31 11:05:31 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bf1b944d
sci-biology/stampy-bin: working ebuild thanks to soap <AT> g.o Package-Manager: portage-2.3.0 sci-biology/stampy-bin/metadata.xml | 12 +++++++ sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild | 43 +++++++++++++++++++++++++ 2 files changed, 55 insertions(+) diff --git a/sci-biology/stampy-bin/metadata.xml b/sci-biology/stampy-bin/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/stampy-bin/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild b/sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild new file mode 100644 index 0000000..0f46696 --- /dev/null +++ b/sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 +PYTHON_COMPAT=( python2_7 ) + +inherit toolchain-funcs python-r1 python-utils-r1 + +DESCRIPTION="Map highly divergent short reads to a reference" +HOMEPAGE="http://www.well.ox.ac.uk/project-stampy"; +SRC_URI="stampy-${PV}.tar.gz" + +LICENSE="stampy-academic" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RESTRICT="fetch" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/stampy-${PV} + +# FIXME: the makefile calls python but fails if that is under python-3.4, 2.7 works +# FIXME: respect CC and CXX + +src_prepare(){ + sed -e 's/-O2 -Wall/$(CFLAGS)/' -i makefile || die +} + +src_install(){ + dobin *.py + python_foreach_impl python_domodule maptools.so + python_moduleinto Stampy + python_foreach_impl python_domodule build/python2.7/Stampy/*.pyc # only *.pyc files available + python_moduleinto ext + python_foreach_impl python_domodule build/python2.7/ext/*.pyc # only *.pyc files available + python_moduleinto plugins + python_foreach_impl python_domodule build/python2.7/plugins/*.py* + dodoc README.txt +}
