[gentoo-commits] proj/sci:master commit in: sci-biology/gbench/

[Martin Mokrejs]

commit:     53b2b237392972cb1f15086dbf5145004acf38da
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jul 30 00:10:03 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jul 30 00:10:03 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=53b2b237

sci-biology/gbench: version bump; run configure; does not compile

Package-Manager: portage-2.3.0

 .../{gbench-2.3.2.ebuild => gbench-2.10.7.ebuild}  | 22 +++++++++++++++++-----
 1 file changed, 17 insertions(+), 5 deletions(-)

diff --git a/sci-biology/gbench/gbench-2.3.2.ebuild 
b/sci-biology/gbench/gbench-2.10.7.ebuild
similarity index 57%
rename from sci-biology/gbench/gbench-2.3.2.ebuild
rename to sci-biology/gbench/gbench-2.10.7.ebuild
index abee15a..d205c87 100644
--- a/sci-biology/gbench/gbench-2.3.2.ebuild
+++ b/sci-biology/gbench/gbench-2.10.7.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -10,7 +10,7 @@ inherit python-single-r1 wxwidgets
 
 DESCRIPTION="View and analyze genome sequences"
 HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/";
-SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-2.3.2/gbench-src-"${PV}".tgz";
+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz";
 
 LICENSE="public-domain"
 SLOT="0"
@@ -34,13 +34,13 @@ RDEPEND="${PYTHON_DEPS}
        dev-util/cppunit
        media-libs/freetype
        media-libs/giflib
-       media-libs/glew
+       media-libs/glew:=
        media-libs/tiff:0=
        net-libs/gnutls
        sci-libs/hdf5
        sys-fs/fuse
        sys-libs/db:*
-       virtual/glut
+       virtual/glu
        virtual/opengl
        x11-libs/fltk
        x11-libs/wxGTK:*
@@ -59,4 +59,16 @@ RDEPEND="${PYTHON_DEPS}
 "
 DEPEND="${RDEPEND}"
 
-# ensure in src_compile no --mandir=/usr/share/man is passed to configure, use 
the ebuild logic from ncbi-tools++
+# recycle ebuild logic from ncbi-tools++
+
+S="${WORKDIR}"/gbench-src-"${PV}"
+
+src_configure(){
+       # configure: error: --mandir=/usr/share/man:  unknown option;  use 
--help to show usage
+       # configure: error: --infodir=/usr/share/info:  unknown option;  use 
--help to show usage
+       # configure: error: --datadir=/usr/share:  unknown option;  use --help 
to show usage
+       # configure: error: --sysconfdir=/etc:  unknown option;  use --help to 
show usage
+       # configure: error: --localstatedir=/var/lib:  unknown option;  use 
--help to show usage
+       ./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" 
--libdir="${EPREFIX}/usr/$(get_libdir)" CC="$(tc-getCC)" \
+               CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" 
|| die
+}