commit: ec639407519c52105c86906c2909ecbeb3a25665 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Jul 14 18:42:06 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Jul 14 18:42:06 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec639407
sci-libs/libmaus2: new package although a version bump of sci-libs/libmaus I think this and the parental libmaus package will need a fix on the LICENSE line (they are not only GPL-v3). Package-Manager: portage-2.2.28 sci-libs/libmaus2/libmaus2-9999.ebuild | 27 +++++++++++++++++++++++++++ sci-libs/libmaus2/metadata.xml | 20 ++++++++++++++++++++ 2 files changed, 47 insertions(+) diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild new file mode 100644 index 0000000..ae02d15 --- /dev/null +++ b/sci-libs/libmaus2/libmaus2-9999.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit autotools git-r3 + +DESCRIPTION="Library for biobambam" +HOMEPAGE="https://github.com/gt1/libmaus"; +EGIT_REPO_URI="https://github.com/gt1/libmaus2.git"; + +LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + !sci-libs/libmaus + sci-libs/io_lib + app-arch/snappy + sci-biology/seqan" + +src_prepare() { + eautoreconf + eapply_user +} diff --git a/sci-libs/libmaus2/metadata.xml b/sci-libs/libmaus2/metadata.xml new file mode 100644 index 0000000..1541e62 --- /dev/null +++ b/sci-libs/libmaus2/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> + <longdescription lang="en"> +libmaus is a collection of data structures and algorithms. It contains + +I/O classes (single byte and UTF-8) + bitio classes (input, output and various forms of bit level manipulation) + text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) + BAM sequence alignment files input/output (simple and collating) + and many lower level support classes. +</longdescription> + <upstream> + <remote-id type="github">gt1/libmaus</remote-id> + </upstream> +</pkgmetadata>
