commit: cd2b87a6861e69e0f984f8ba9a9f6520730bcc2b
Author: Tiziano Müller <dev-zero <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 7 08:19:48 2016 +0000
Commit: Tiziano Müller <dev-zero <AT> gentoo <DOT> org>
CommitDate: Thu Jul 7 08:19:48 2016 +0000
URL: https://gitweb.gentoo.org/dev/dev-zero.git/commit/?id=cd2b87a6
sci-mathematics/netgen: need source files for freecad
sci-mathematics/netgen/Manifest | 3 +
.../netgen-5.x-compile-against-occ-6.5.x.patch | 28 ++
.../netgen/files/netgen-5.x-fedora-fixes.patch | 223 +++++++++++
.../netgen/files/netgen-5.x-includes-fixes.patch | 29 ++
.../netgen/files/netgen-5.x-makefiles-fixes.patch | 412 +++++++++++++++++++++
.../netgen/files/netgen-5.x-metis-fixes.patch | 102 +++++
.../netgen/files/netgen-5.x-missing-define.patch | 38 ++
.../files/netgen-5.x-occ-stl-api-change.patch | 94 +++++
.../files/netgen-5.x-parallelmetis4-fix.patch | 36 ++
sci-mathematics/netgen/files/netgen.desktop | 8 +
sci-mathematics/netgen/files/netgen.png | Bin 0 -> 4220 bytes
sci-mathematics/netgen/metadata.xml | 14 +
sci-mathematics/netgen/netgen-5.3.1-r1.ebuild | 126 +++++++
13 files changed, 1113 insertions(+)
diff --git a/sci-mathematics/netgen/Manifest b/sci-mathematics/netgen/Manifest
new file mode 100644
index 0000000..95e6b78
--- /dev/null
+++ b/sci-mathematics/netgen/Manifest
@@ -0,0 +1,3 @@
+DIST netgen-4.9.13.tar.gz 1829916 SHA256
a5f188bb0fafc0536389314efb8fe6d294b93512b54f2b67c9a3e5431c3b0412 SHA512
6cfe6ea799f37a35dc74112f5c370fd369277a55965769649c00632eba308061901fd7563fe7eb4b427b0702d39f4f004854da9f02f2e6f11ccd3a72e6b6afa3
WHIRLPOOL
e4a0dc3ca74241f77d3c389b30944ea59fe7b0035af18f343499f4f7f644568fd5b687590b249b25121614508496ff8270ca52e91c8a2997ac2792f301533b4c
+DIST netgen-5.0.0.tar.gz 1835004 SHA256
c122aa41fe6cc7c491df5df40c1c2a5633ee96a36d363a630ff1c5c4e4921419 SHA512
27f46feaa1cf9d269c4898c093cca404fdc5e5fbfc8c9684d0d2f2ec2f2f9af85dd8b3d3372044f63fca08e1a079fd042fbcdc7b9ca881c38a3cfe67586b34b4
WHIRLPOOL
98a1eb2455d767929a808145e2e55d7064a99e0e6e2c80e464736b6b30df750d03069fc6f04a2e3e0d876f5664b6a2138e5ea5e3a9ac99294756ba4187710963
+DIST netgen-5.3.1.tar.gz 1857185 SHA256
cb97f79d8f4d55c00506ab334867285cde10873c8a8dc783522b47d2bc128bf9 SHA512
6f5b5b8ab47fc3bf57281b26f26b13675aa719146c90a928eda3d704163e20a0a3baf27d520978ec6c4828ee6323eaef65deb851988eefef5d768a9ecad69fc8
WHIRLPOOL
da869ad1cbcd538ab56e6a1b0716a55bfdfc66dbe9e881f2b6a25c15e70e93d5560021eb331026e1228d3f9dfa97c94bfefb009f0927039f549aaabada18c60e
diff --git
a/sci-mathematics/netgen/files/netgen-5.x-compile-against-occ-6.5.x.patch
b/sci-mathematics/netgen/files/netgen-5.x-compile-against-occ-6.5.x.patch
new file mode 100644
index 0000000..ce581ce
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-compile-against-occ-6.5.x.patch
@@ -0,0 +1,28 @@
+--- libsrc/occ/Partition_Spliter.cxx.old 2012-11-14 16:14:39.440625195
+0100
++++ libsrc/occ/Partition_Spliter.cxx 2012-11-14 16:15:20.035646075 +0100
+@@ -1169,8 +1169,8 @@
+ for (; j<=nbj && ok; ++j) {
+ if (Extrema.IsMin(j)) {
+ hasMin = Standard_True;
+- ok = Extrema.Value(j) <= tol; // V6.3
+- // ok = Extrema.SquareDistance(j) <= tol; // V6.5
++ // ok = Extrema.Value(j) <= tol; // V6.3
++ ok = Extrema.SquareDistance(j) <= tol; // V6.5
+ }
+ }
+ }
+--- libsrc/occ/Partition_Inter3d.cxx.old 2012-11-14 16:13:11.149581085
+0100
++++ libsrc/occ/Partition_Inter3d.cxx 2012-11-14 16:14:20.017615214 +0100
+@@ -243,9 +243,9 @@
+ Standard_Integer i, nbExt = anExtPS.NbExt();
+ Extrema_POnSurf aPOnSurf;
+ for (i = 1; i <= nbExt; ++i )
+- if (anExtPS.Value( i ) <= TolE) // V6.3
+- // if (anExtPS.SquareDistance( i ) <= TolE) // V6.5
+- {
++ // if (anExtPS.Value( i ) <= TolE) // V6.3
++ if (anExtPS.SquareDistance( i ) <= TolE) // V6.5
++ {
+ aPOnSurf = anExtPS.Point( i );
+ break;
+ }
diff --git a/sci-mathematics/netgen/files/netgen-5.x-fedora-fixes.patch
b/sci-mathematics/netgen/files/netgen-5.x-fedora-fixes.patch
new file mode 100644
index 0000000..5cb399e
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-fedora-fixes.patch
@@ -0,0 +1,223 @@
+diff -uwrN netgen-5.3.1/libsrc/meshing/meshtype.cpp
netgen/libsrc/meshing/meshtype.cpp
+--- netgen-5.3.1/libsrc/meshing/meshtype.cpp 2016-02-20 21:55:59.226450843
+0100
++++ netgen/libsrc/meshing/meshtype.cpp 2016-02-20 23:54:12.293646166 +0100
+@@ -1,4 +1,5 @@
+ #include <mystdlib.h>
++#include <float.h> // to get DBL_MIN defined
+
+ #include "meshing.hpp"
+
+@@ -666,7 +667,8 @@
+
+ double det = trans.Det();
+
+- if (det <= 0)
++ // if (det <= 0)
++ if (det <= DBL_MIN) // avoid FPE
+ err += 1e12;
+ else
+ err += frob * frob / det;
+@@ -722,7 +724,8 @@
+
+ double det = trans(0,0)*trans(1,1)-trans(1,0)*trans(0,1);
+
+- if (det <= 0)
++ // if (det <= 0)
++ if (det <= DBL_MIN) // avoid FPE
+ {
+ dd = 0;
+ return 1e12;
+@@ -806,7 +809,8 @@
+ = dtrans(0,0) * trans(1,1) - trans(0,1) * dtrans(1,0)
+ + trans(0,0) * dtrans(1,1) - dtrans(0,1) * trans(1,0);
+
+- if (det <= 0)
++ // if (det <= 0)
++ if (det <= DBL_MIN) // avoid FPE
+ err += 1e12;
+ else
+ {
+@@ -856,7 +860,8 @@
+ frob /= 2;
+
+ double det = trans.Det();
+- if (det <= 0)
++ //if (det <= 0)
++ if (det <= DBL_MIN) // avoid FPE
+ err += 1e12;
+ else
+ err += frob * frob / det;
+@@ -1864,7 +1869,8 @@
+ case PYRAMID:
+ {
+ double noz = 1-p(2);
+- if (noz == 0.0) noz = 1e-10;
++ //if (noz == 0.0) noz = 1e-10;
++ if (noz <= DBL_MIN) noz = 1e-10; // avoid FPE
+
+ double xi = p(0) / noz;
+ double eta = p(1) / noz;
+@@ -2513,10 +2519,10 @@
+
+ MeshingParameters :: MeshingParameters ()
+ {
+- optimize3d = "cmdmustm";
++ optimize3d = (char*)"cmdmustm"; // optimize3d = "cmdmustm";
+ //optimize3d = "cmdmstm";
+ optsteps3d = 3;
+- optimize2d = "smsmsmSmSmSm";
++ optimize2d = (char*)"smsmsmSmSmSm"; // optimize2d = "smsmsmSmSmSm";
+ optsteps2d = 3;
+ opterrpow = 2;
+ blockfill = 1;
+diff -uwrN netgen-5.3.1/libsrc/meshing/meshtype.hpp
netgen/libsrc/meshing/meshtype.hpp
+--- netgen-5.3.1/libsrc/meshing/meshtype.hpp 2016-02-20 21:55:59.226450843
+0100
++++ netgen/libsrc/meshing/meshtype.hpp 2016-02-20 23:54:12.295646166 +0100
+@@ -15,6 +15,7 @@
+ Classes for NETGEN
+ */
+
++class Mesh; // added due to compilation errors on some platforms
+
+
+ enum ELEMENT_TYPE {
+diff -uwrN netgen-5.3.1/libsrc/meshing/smoothing2.cpp
netgen/libsrc/meshing/smoothing2.cpp
+--- netgen-5.3.1/libsrc/meshing/smoothing2.cpp 2016-02-20 21:55:59.228450843
+0100
++++ netgen/libsrc/meshing/smoothing2.cpp 2016-02-20 23:54:12.298646166
+0100
+@@ -361,7 +361,8 @@
+ vgrad = 0;
+ double badness = 0;
+
+- ld.meshthis -> GetNormalVector (ld.surfi, ld.sp1, ld.gi1, n);
++ //normal already computed: ld.meshthis -> GetNormalVector (ld.surfi,
ld.sp1, ld.gi1, n);
++ n = ld.normal;
+ pp1 = ld.sp1 + x(0) * ld.t1 + x(1) * ld.t2;
+
+ // meshthis -> ProjectPoint (surfi, pp1);
+@@ -577,7 +578,8 @@
+ vgrad = 0;
+ badness = 0;
+
+- ld.meshthis -> GetNormalVector (ld.surfi, ld.sp1, ld.gi1, n);
++ //normal already computed: ld.meshthis -> GetNormalVector (ld.surfi,
ld.sp1, ld.gi1, n);
++ n = ld.normal;
+
+ pp1 = ld.sp1 + x(0) * ld.t1 + x(1) * ld.t2;
+
+@@ -649,7 +651,8 @@
+ vgrad = 0;
+ badness = 0;
+
+- ld.meshthis -> GetNormalVector (ld.surfi, ld.sp1, ld.gi1, n);
++ //normal already computed: ld.meshthis -> GetNormalVector (ld.surfi,
ld.sp1, ld.gi1, n);
++ n = ld.normal;
+
+ // pp1 = sp1;
+ // pp1.Add2 (x.Get(1), t1, x.Get(2), t2);
+diff -uwrN netgen-5.3.1/libsrc/occ/occconstruction.cpp
netgen/libsrc/occ/occconstruction.cpp
+--- netgen-5.3.1/libsrc/occ/occconstruction.cpp 2016-02-20
21:53:44.420447131 +0100
++++ netgen/libsrc/occ/occconstruction.cpp 2016-02-20 23:54:12.299646166
+0100
+@@ -28,7 +28,7 @@
+ #include <BRepAlgoAPI_Common.hxx>
+ #include <BRepAlgoAPI_Fuse.hxx>
+ #include <BRepAlgoAPI_Section.hxx>
+-#include <BRepOffsetAPI_Sewing.hxx>
++//#include <BRepOffsetAPI_Sewing.hxx>
+ //#include <BRepAlgo_Sewing.hxx>
+ #include <BRepOffsetAPI_MakeOffsetShape.hxx>
+ #include <ShapeFix_Shape.hxx>
+diff -uwrN netgen-5.3.1/libsrc/occ/occmeshsurf.cpp
netgen/libsrc/occ/occmeshsurf.cpp
+--- netgen-5.3.1/libsrc/occ/occmeshsurf.cpp 2016-02-20 21:53:44.421447131
+0100
++++ netgen/libsrc/occ/occmeshsurf.cpp 2016-02-20 23:54:12.310646166 +0100
+@@ -6,6 +6,7 @@
+ #include <meshing.hpp>
+ #include <GeomLProp_SLProps.hxx>
+ #include <ShapeAnalysis_Surface.hxx>
++#include <GeomAPI_ProjectPointOnCurve.hxx> // -- moved here from occgeom.hpp
+
+
+ namespace netgen
+@@ -689,7 +691,7 @@
+ }
+
+ newp = hnewp;
+- }
++ }//; -- to compile with -Wall -pedantic
+
+
+ void OCCRefinementSurfaces ::
+
+
+diff -uwrN netgen-5.3.1/libsrc/occ/Partition_Inter3d.cxx
netgen/libsrc/occ/Partition_Inter3d.cxx
+--- netgen-5.3.1/libsrc/occ/Partition_Inter3d.cxx 2016-02-20
21:53:44.418447131 +0100
++++ netgen/libsrc/occ/Partition_Inter3d.cxx 2016-02-20 23:54:12.311646166
+0100
+@@ -243,8 +243,10 @@
+ Standard_Integer i, nbExt = anExtPS.NbExt();
+ Extrema_POnSurf aPOnSurf;
+ for (i = 1; i <= nbExt; ++i )
++ // porting to OCCT6.5.1
+ // if (anExtPS.Value( i ) <= TolE) // V6.3
+- if (anExtPS.SquareDistance( i ) <= TolE) // V6.5
++ // if (anExtPS.SquareDistance( i ) <= TolE) // V6.5
++ if (anExtPS.SquareDistance( i ) <= TolE * TolE)
+ {
+ aPOnSurf = anExtPS.Point( i );
+ break;
+diff -uwrN netgen-5.3.1/libsrc/occ/Partition_Spliter.cxx
netgen/libsrc/occ/Partition_Spliter.cxx
+--- netgen-5.3.1/libsrc/occ/Partition_Spliter.cxx 2016-02-20
21:53:44.420447131 +0100
++++ netgen/libsrc/occ/Partition_Spliter.cxx 2016-02-20 23:54:12.313646166
+0100
+@@ -1169,8 +1169,10 @@
+ for (; j<=nbj && ok; ++j) {
+ if (Extrema.IsMin(j)) {
+ hasMin = Standard_True;
++ // porting to OCCT6.5.1
+ // ok = Extrema.Value(j) <= tol; // V6.3
+- ok = Extrema.SquareDistance(j) <= tol; // V6.5
++ // ok = Extrema.SquareDistance(j) <= tol; // V6.5
++ ok = Extrema.SquareDistance(j) <= tol * tol;
+ }
+ }
+ }
+diff -uwrN netgen-5.3.1/libsrc/occ/utilities.h netgen/libsrc/occ/utilities.h
+--- netgen-5.3.1/libsrc/occ/utilities.h 2016-02-20 21:53:44.421447131
+0100
++++ netgen/libsrc/occ/utilities.h 2016-02-20 23:54:12.314646166 +0100
+@@ -33,6 +33,7 @@
+
+ #include <string>
+ #include <iostream>
++#include <iomanip>
+ #include <cstdlib>
+ // #include "SALOME_Log.hxx"
+
+diff -uwrN netgen-5.3.1/libsrc/stlgeom/stlgeommesh.cpp
netgen/libsrc/stlgeom/stlgeommesh.cpp
+--- netgen-5.3.1/libsrc/stlgeom/stlgeommesh.cpp 2016-02-20
21:55:59.234450844 +0100
++++ netgen/libsrc/stlgeom/stlgeommesh.cpp 2016-02-20 23:54:12.315646166
+0100
+@@ -1435,7 +1435,8 @@
+ /*
+ if (!optstring || strlen(optstring) == 0)
+ {
+- mparam.optimize2d = "smcm";
++ //mparam.optimize2d = (char*)"smcm";
++ mparam.optimize2d = (char*)"smcm";
+ }
+ else
+ {
+@@ -1453,7 +1454,7 @@
+ mesh -> LoadLocalMeshSize (mparam.meshsizefilename);
+ mesh -> CalcLocalHFromSurfaceCurvature (mparam.grading,
+
stlparam.resthsurfmeshcurvfac);
+- mparam.optimize2d = "cmsmSm";
++ mparam.optimize2d = "(char*)cmsmSm";
+ STLSurfaceOptimization (*stlgeometry, *mesh, mparam);
+ #ifdef STAT_STREAM
+ (*statout) << GetTime() << " & ";
+@@ -1560,7 +1561,8 @@
+ /*
+ if (!optstring || strlen(optstring) == 0)
+ {
+- mparam.optimize3d = "cmdmstm";
++ //mparam.optimize3d = "cmdmstm";
++ mparam.optimize3d = (char*)"cmdmstm";
+ }
+ else
+ {
diff --git a/sci-mathematics/netgen/files/netgen-5.x-includes-fixes.patch
b/sci-mathematics/netgen/files/netgen-5.x-includes-fixes.patch
new file mode 100644
index 0000000..650b575
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-includes-fixes.patch
@@ -0,0 +1,29 @@
+diff -uwrN -x.git netgen-5.3.1/libsrc/include/meshing.hpp
netgen/libsrc/include/meshing.hpp
+--- netgen-5.3.1/libsrc/include/meshing.hpp 2016-02-21 20:12:55.885186643
+0100
++++ netgen/libsrc/include/meshing.hpp 2016-02-21 20:09:26.275180871 +0100
+@@ -1 +1 @@
+-#include <../meshing/meshing.hpp>
++#include "../meshing/meshing.hpp"
+diff -uwrN -x.git netgen-5.3.1/libsrc/include/myadt.hpp
netgen/libsrc/include/myadt.hpp
+--- netgen-5.3.1/libsrc/include/myadt.hpp 2016-02-21 20:12:55.886186643
+0100
++++ netgen/libsrc/include/myadt.hpp 2016-02-21 20:09:26.275180871 +0100
+@@ -1 +1 @@
+-#include <../general/myadt.hpp>
++#include "../general/myadt.hpp"
+diff -uwrN -x.git netgen-5.3.1/libsrc/include/stlgeom.hpp
netgen/libsrc/include/stlgeom.hpp
+--- netgen-5.3.1/libsrc/include/stlgeom.hpp 2016-02-21 20:12:55.886186643
+0100
++++ netgen/libsrc/include/stlgeom.hpp 2016-02-21 20:09:26.275180871 +0100
+@@ -1 +1 @@
+-#include <../stlgeom/stlgeom.hpp>
++#include "../stlgeom/stlgeom.hpp"
+diff -uwrN -x.git netgen-5.3.1/libsrc/meshing/parallelmesh.cpp
netgen/libsrc/meshing/parallelmesh.cpp
+--- netgen-5.3.1/libsrc/meshing/parallelmesh.cpp 2016-02-21
20:12:55.888186643 +0100
++++ netgen/libsrc/meshing/parallelmesh.cpp 2016-02-21 20:09:26.276180871
+0100
+@@ -1,6 +1,6 @@
+ #ifdef PARALLEL
+
+-#include <meshing.hpp>
++#include "meshing.hpp"
+ #include "paralleltop.hpp"
+
+ // #define METIS4
diff --git a/sci-mathematics/netgen/files/netgen-5.x-makefiles-fixes.patch
b/sci-mathematics/netgen/files/netgen-5.x-makefiles-fixes.patch
new file mode 100644
index 0000000..b6c8fd4
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-makefiles-fixes.patch
@@ -0,0 +1,412 @@
+diff -uwrN -x.git netgen-5.3.1/configure.ac netgen/configure.ac
+--- netgen-5.3.1/configure.ac 2016-02-21 21:40:41.852331652 +0100
++++ netgen/configure.ac 2016-02-21 21:39:31.355329711 +0100
+@@ -14,7 +14,6 @@
+ AC_DISABLE_STATIC
+
+ AC_LANG([C++])
+-AM_PROG_AR
+ AC_PROG_CXX
+
+ AC_OPENMP
+@@ -36,15 +35,15 @@
+ [AC_HELP_STRING([--with-occ=dir],[use OpenCascade installed in
directory dir])],
+ [occdir=$withval]
+ [occon=true],
+- [occdir=/opt/OpenCASCADE]
++ [occdir=$CASROOT]
+ )
+
+
+
+ if test a$occon = atrue ; then
+
+- AC_SUBST([OCCFLAGS], ["-DOCCGEOMETRY -I$occdir/inc
-I/usr/include/opencascade"])
+- AC_SUBST([OCCLIBS], ["-L$occdir/lib -lTKernel -lTKGeomBase -lTKMath
-lTKG2d -lTKG3d -lTKXSBase -lTKOffset -lTKFillet -lTKShHealing -lTKMesh
-lTKMeshVS -lTKTopAlgo -lTKGeomAlgo -lTKBool -lTKPrim -lTKBO -lTKIGES -lTKBRep
-lTKSTEPBase -lTKSTEP -lTKSTL -lTKSTEPAttr -lTKSTEP209 -lTKXDESTEP -lTKXDEIGES
-lTKXCAF -lTKLCAF -lFWOSPlugin"])
++ AC_SUBST([OCCFLAGS], ["-DOCCGEOMETRY -I$occdir/inc"])
++ AC_SUBST([OCCLIBS], ["-lTKernel -lTKGeomBase -lTKMath -lTKG2d -lTKG3d
-lTKXSBase -lTKOffset -lTKFillet -lTKShHealing -lTKMesh -lTKMeshVS -lTKTopAlgo
-lTKGeomAlgo -lTKBool -lTKPrim -lTKBO -lTKIGES -lTKBRep -lTKSTEPBase -lTKSTEP
-lTKSTL -lTKSTEPAttr -lTKSTEP209 -lTKXDESTEP -lTKXDEIGES -lTKXCAF -lTKLCAF
-lFWOSPlugin"])
+
+ # -lTKDCAF
+
+@@ -90,18 +89,18 @@
+ [AC_HELP_STRING([--disable-gui],[don't build netgen with GUI])],
+ [if test "$enableval" = yes; then ngguion=true; else ngguion=false;
fi])
+
+-metisdir=/usr/local
++metisdir=/usr
+ AC_ARG_WITH([metis],
+ [AC_HELP_STRING([--with-metis=dir],[path to metis 5.x])],
+ [metisdir=$withval],
+- [metisdir=/usr/local]
++ [metisdir=/usr]
+ )
+
+ AC_ARG_ENABLE([parallel],
+ [AC_HELP_STRING([--enable-parallel],[enable mpi parallelization])],
+- [AC_SUBST([MPI_INCLUDES], "-I$metisdir/include -DMETIS")]
++ [AC_SUBST([MPI_INCLUDES], "-DMETIS")]
+ [CXXFLAGS="$CXXFLAGS -DPARALLEL"]
+- [AC_SUBST([MPI_LIBS], "-L$metisdir/lib -lmetis")]
++ [AC_SUBST([MPI_LIBS], "-lmetis")]
+ )
+ # -DVTRACE
+ # -lvt-hyb
+diff -uwrN -x.git netgen-5.3.1/libsrc/csg/Makefile.am
netgen/libsrc/csg/Makefile.am
+--- netgen-5.3.1/libsrc/csg/Makefile.am 2016-02-21 21:40:41.852331652
+0100
++++ netgen/libsrc/csg/Makefile.am 2016-02-21 21:39:31.355329711 +0100
+@@ -8,24 +8,24 @@
+ AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include $(TCL_INCLUDES)
+ METASOURCES = AUTO
+
+-lib_LTLIBRARIES = libcsg.la
++lib_LTLIBRARIES = libngcsg.la
+
+
+-libcsg_la_SOURCES = algprim.cpp brick.cpp \
++libngcsg_la_SOURCES = algprim.cpp brick.cpp \
+ bspline2d.cpp csgeom.cpp csgparser.cpp curve2d.cpp edgeflw.cpp \
+ explicitcurve2d.cpp extrusion.cpp gencyl.cpp genmesh.cpp identify.cpp \
+ manifold.cpp meshsurf.cpp polyhedra.cpp revolution.cpp singularref.cpp \
+ solid.cpp specpoin.cpp spline3d.cpp surface.cpp triapprox.cpp
+
+-libcsg_la_LIBADD = $(top_builddir)/libsrc/meshing/libmesh.la
++libngcsg_la_LIBADD = $(top_builddir)/libsrc/meshing/libngmesh.la
+
+
+
+ if NGGUI
+-lib_LTLIBRARIES += libcsgvis.la
++lib_LTLIBRARIES += libngcsgvis.la
+
+-libcsgvis_la_SOURCES = vscsg.cpp csgpkg.cpp
+-libcsgvis_la_LIBADD = libcsg.la
++libngcsgvis_la_SOURCES = vscsg.cpp csgpkg.cpp
++libngcsgvis_la_LIBADD = libngcsg.la
+ endif
+
+ # $(top_builddir)/libsrc/geom2d/libgeom2d.la
+diff -uwrN -x.git netgen-5.3.1/libsrc/general/Makefile.am
netgen/libsrc/general/Makefile.am
+--- netgen-5.3.1/libsrc/general/Makefile.am 2016-02-21 21:40:41.852331652
+0100
++++ netgen/libsrc/general/Makefile.am 2016-02-21 21:39:31.356329711 +0100
+@@ -4,8 +4,8 @@
+
+ AM_CPPFLAGS = $(MPI_INCLUDES) -I$(top_srcdir)/libsrc/include
+ METASOURCES = AUTO
+-noinst_LTLIBRARIES = libgen.la
+-libgen_la_SOURCES = array.cpp bitarray.cpp dynamicmem.cpp flags.cpp \
++noinst_LTLIBRARIES = libnggen.la
++libnggen_la_SOURCES = array.cpp bitarray.cpp dynamicmem.cpp flags.cpp \
+ hashtabl.cpp mystring.cpp ngexception.cpp optmem.cpp parthreads.cpp \
+ profiler.cpp seti.cpp sort.cpp spbita2d.cpp symbolta.cpp table.cpp \
+ mpi_interface.cpp gzstream.cpp
+diff -uwrN -x.git netgen-5.3.1/libsrc/geom2d/Makefile.am
netgen/libsrc/geom2d/Makefile.am
+--- netgen-5.3.1/libsrc/geom2d/Makefile.am 2016-02-21 21:40:41.852331652
+0100
++++ netgen/libsrc/geom2d/Makefile.am 2016-02-21 21:39:31.356329711 +0100
+@@ -4,18 +4,18 @@
+
+ METASOURCES = AUTO
+
+-lib_LTLIBRARIES = libgeom2d.la
++lib_LTLIBRARIES = libnggeom2d.la
+
+ if NGGUI
+-lib_LTLIBRARIES += libgeom2dvis.la
++lib_LTLIBRARIES += libnggeom2dvis.la
+ endif
+
+
+
+-libgeom2d_la_SOURCES = genmesh2d.cpp geom2dmesh.cpp geometry2d.cpp
+-libgeom2d_la_LIBADD = $(top_builddir)/libsrc/meshing/libmesh.la
++libnggeom2d_la_SOURCES = genmesh2d.cpp geom2dmesh.cpp geometry2d.cpp
++libnggeom2d_la_LIBADD = $(top_builddir)/libsrc/meshing/libngmesh.la
$(MPI_LIBS)
+
+-libgeom2dvis_la_SOURCES = geom2dpkg.cpp vsgeom2d.cpp
+-libgeom2dvis_la_LIBADD = libgeom2d.la
++libnggeom2dvis_la_SOURCES = geom2dpkg.cpp vsgeom2d.cpp
++libnggeom2dvis_la_LIBADD = libnggeom2d.la -lGL $(MPI_LIBS)
+
+
+diff -uwrN -x.git netgen-5.3.1/libsrc/gprim/Makefile.am
netgen/libsrc/gprim/Makefile.am
+--- netgen-5.3.1/libsrc/gprim/Makefile.am 2016-02-21 21:40:41.853331652
+0100
++++ netgen/libsrc/gprim/Makefile.am 2016-02-21 21:39:31.357329711 +0100
+@@ -2,6 +2,6 @@
+
+ AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include
+ METASOURCES = AUTO
+-noinst_LTLIBRARIES = libgprim.la
+-libgprim_la_SOURCES = adtree.cpp geom2d.cpp geom3d.cpp geomfuncs.cpp \
++noinst_LTLIBRARIES = libnggprim.la
++libnggprim_la_SOURCES = adtree.cpp geom2d.cpp geom3d.cpp geomfuncs.cpp \
+ geomtest3d.cpp transform3d.cpp spline.cpp splinegeometry.cpp
+diff -uwrN -x.git netgen-5.3.1/libsrc/interface/Makefile.am
netgen/libsrc/interface/Makefile.am
+--- netgen-5.3.1/libsrc/interface/Makefile.am 2016-02-21 21:40:41.853331652
+0100
++++ netgen/libsrc/interface/Makefile.am 2016-02-21 21:39:31.357329711
+0100
+@@ -2,14 +2,14 @@
+
+ AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include -I$(top_srcdir)/libsrc/interface
$(MPI_INCLUDES) $(TCL_INCLUDES) -DOPENGL
+ METASOURCES = AUTO
+-lib_LTLIBRARIES = libinterface.la
+-libinterface_la_SOURCES = nginterface.cpp nginterface_v2.cpp \
++lib_LTLIBRARIES = libnginterface.la
++libnginterface_la_SOURCES = nginterface.cpp nginterface_v2.cpp \
+ read_fnf_mesh.cpp readtetmesh.cpp readuser.cpp writeabaqus.cpp
writediffpack.cpp \
+ writedolfin.cpp writeelmer.cpp writefeap.cpp writefluent.cpp
writegmsh.cpp writejcm.cpp \
+ writepermas.cpp writetecplot.cpp writetet.cpp writetochnog.cpp
writeuser.cpp \
+ wuchemnitz.cpp writegmsh2.cpp writeOpenFOAM15x.cpp
+
+
+-libinterface_la_LIBADD = $(top_builddir)/libsrc/meshing/libmesh.la
++libnginterface_la_LIBADD = $(top_builddir)/libsrc/meshing/libngmesh.la
+
+ # libinterface_la_LDFLAGS = -rdynamic
+diff -uwrN -x.git netgen-5.3.1/libsrc/linalg/Makefile.am
netgen/libsrc/linalg/Makefile.am
+--- netgen-5.3.1/libsrc/linalg/Makefile.am 2016-02-21 21:40:41.853331652
+0100
++++ netgen/libsrc/linalg/Makefile.am 2016-02-21 21:39:31.357329711 +0100
+@@ -1,8 +1,8 @@
+ noinst_HEADERS = densemat.hpp linalg.hpp polynomial.hpp vector.hpp opti.hpp
+ AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include
+ METASOURCES = AUTO
+-noinst_LTLIBRARIES = libla.la
+-libla_la_SOURCES = densemat.cpp polynomial.cpp bfgs.cpp linopt.cpp
linsearch.cpp
++noinst_LTLIBRARIES = libngla.la
++libngla_la_SOURCES = densemat.cpp polynomial.cpp bfgs.cpp linopt.cpp
linsearch.cpp
+
+ # vector.cpp
+
+diff -uwrN -x.git netgen-5.3.1/libsrc/meshing/Makefile.am
netgen/libsrc/meshing/Makefile.am
+--- netgen-5.3.1/libsrc/meshing/Makefile.am 2016-02-21 21:40:41.853331652
+0100
++++ netgen/libsrc/meshing/Makefile.am 2016-02-21 21:39:31.358329711 +0100
+@@ -15,9 +15,9 @@
+
+ METASOURCES = AUTO
+
+-lib_LTLIBRARIES = libmesh.la
++lib_LTLIBRARIES = libngmesh.la
+
+-libmesh_la_SOURCES = adfront2.cpp adfront3.cpp bisect.cpp boundarylayer.cpp \
++libngmesh_la_SOURCES = adfront2.cpp adfront3.cpp bisect.cpp boundarylayer.cpp
\
+ clusters.cpp curvedelems.cpp delaunay.cpp delaunay2d.cpp \
+ geomsearch.cpp global.cpp hprefinement.cpp improve2.cpp \
+ improve2gen.cpp improve3.cpp localh.cpp meshclass.cpp \
+@@ -30,8 +30,8 @@
+ topology.cpp triarls.cpp validate.cpp zrefine.cpp bcfunctions.cpp \
+ parallelmesh.cpp paralleltop.cpp paralleltop.hpp basegeom.cpp
+
+-libmesh_la_LIBADD = $(top_builddir)/libsrc/linalg/libla.la \
+- $(top_builddir)/libsrc/gprim/libgprim.la \
+- $(top_builddir)/libsrc/general/libgen.la \
+- -lz
++libngmesh_la_LIBADD = $(top_builddir)/libsrc/linalg/libngla.la \
++ $(top_builddir)/libsrc/gprim/libnggprim.la \
++ $(top_builddir)/libsrc/general/libnggen.la \
++ $(MPI_LIBS) -lz
+
+diff -uwrN -x.git netgen-5.3.1/libsrc/occ/Makefile.am
netgen/libsrc/occ/Makefile.am
+--- netgen-5.3.1/libsrc/occ/Makefile.am 2016-02-21 21:40:41.853331652
+0100
++++ netgen/libsrc/occ/Makefile.am 2016-02-21 21:39:31.358329711 +0100
+@@ -14,20 +14,20 @@
+
+ METASOURCES = AUTO
+
+-lib_LTLIBRARIES = libocc.la
++lib_LTLIBRARIES = libngocc.la
+
+ if NGGUI
+-lib_LTLIBRARIES += liboccvis.la
++lib_LTLIBRARIES += libngoccvis.la
+ endif
+
+
+-libocc_la_SOURCES = Partition_Inter2d.cxx Partition_Inter3d.cxx \
++libngocc_la_SOURCES = Partition_Inter2d.cxx Partition_Inter3d.cxx \
+ Partition_Loop.cxx Partition_Loop2d.cxx Partition_Loop3d.cxx
Partition_Spliter.cxx \
+ occconstruction.cpp occgenmesh.cpp occgeom.cpp occmeshsurf.cpp
+
+-libocc_la_LIBADD = $(OCCLIBS)
++libngocc_la_LIBADD = $(OCCLIBS)
+
+-liboccvis_la_SOURCES = occpkg.cpp vsocc.cpp
+-liboccvis_la_LIBADD = libocc.la
++libngoccvis_la_SOURCES = occpkg.cpp vsocc.cpp
++libngoccvis_la_LIBADD = libngocc.la $(TCL_LIB_SPEC)
+
+
+diff -uwrN -x.git netgen-5.3.1/libsrc/stlgeom/Makefile.am
netgen/libsrc/stlgeom/Makefile.am
+--- netgen-5.3.1/libsrc/stlgeom/Makefile.am 2016-02-21 21:40:41.854331653
+0100
++++ netgen/libsrc/stlgeom/Makefile.am 2016-02-21 21:39:31.359329711 +0100
+@@ -4,18 +4,18 @@
+ AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include $(TCL_INCLUDES)
+ METASOURCES = AUTO
+
+-lib_LTLIBRARIES = libstl.la
++lib_LTLIBRARIES = libngstl.la
+
+ if NGGUI
+-lib_LTLIBRARIES += libstlvis.la
++lib_LTLIBRARIES += libngstlvis.la
+ endif
+
+-libstl_la_SOURCES = meshstlsurface.cpp stlgeom.cpp stlgeomchart.cpp \
++libngstl_la_SOURCES = meshstlsurface.cpp stlgeom.cpp stlgeomchart.cpp \
+ stlgeommesh.cpp stlline.cpp stltool.cpp stltopology.cpp
+
+
+-libstlvis_la_SOURCES = stlpkg.cpp vsstl.cpp
+-libstlvis_la_LIBADD = libstl.la
+-libstl_la_LIBADD = $(top_builddir)/libsrc/meshing/libmesh.la
++libngstlvis_la_SOURCES = stlpkg.cpp vsstl.cpp
++libngstlvis_la_LIBADD = libngstl.la -lGL $(MPI_LIBS) $(TCL_LIB_SPEC)
++libngstl_la_LIBADD = $(top_builddir)/libsrc/meshing/libngmesh.la $(MPI_LIBS)
+ # libstlvis_la_LIBADD = libstl.la $(top_builddir)/libsrc/linalg/libla.la
+
+diff -uwrN -x.git netgen-5.3.1/libsrc/visualization/Makefile.am
netgen/libsrc/visualization/Makefile.am
+--- netgen-5.3.1/libsrc/visualization/Makefile.am 2016-02-21
21:40:41.854331653 +0100
++++ netgen/libsrc/visualization/Makefile.am 2016-02-21 21:39:31.359329711
+0100
+@@ -7,11 +7,11 @@
+ METASOURCES = AUTO
+
+ if NGGUI
+-noinst_LTLIBRARIES = libvisual.la
++noinst_LTLIBRARIES = libngvisual.la
+ endif
+
+
+-libvisual_la_SOURCES = meshdoc.cpp mvdraw.cpp \
++libngvisual_la_SOURCES = meshdoc.cpp mvdraw.cpp \
+ vsfieldlines.cpp vsmesh.cpp vssolution.cpp importsolution.cpp
+
+-
++libngvisual_la_LIBADD = -lGL
+diff -uwrN -x.git netgen-5.3.1/libsrc/visualization/Makefile.in
netgen/libsrc/visualization/Makefile.in
+--- netgen-5.3.1/libsrc/visualization/Makefile.in 2016-02-21
21:40:41.855331653 +0100
++++ netgen/libsrc/visualization/Makefile.in 2016-02-21 21:39:31.360329711
+0100
+@@ -275,7 +275,7 @@
+ visual.hpp vssolution.hpp
+
+ include_HEADERS = soldata.hpp
+-AM_CPPFLAGS = $(MPI_INCLUDES) -I$(top_srcdir)/libsrc/include -DOPENGL
-D$(TOGL_WINDOWINGSYSTEM) $(OCCFLAGS) $(TCL_INCLUDES)
++AM_CPPFLAGS = $(MPI_INCLUDES) -I$(top_srcdir)/libsrc/include -DOPENGL
$(OCCFLAGS) $(TCL_INCLUDES)
+ METASOURCES = AUTO
+ @NGGUI_TRUE@noinst_LTLIBRARIES = libvisual.la
+ libvisual_la_SOURCES = meshdoc.cpp mvdraw.cpp \
+diff -uwrN -x.git netgen-5.3.1/ng/Makefile.am netgen/ng/Makefile.am
+--- netgen-5.3.1/ng/Makefile.am 2016-02-21 21:40:41.855331653 +0100
++++ netgen/ng/Makefile.am 2016-02-21 21:39:31.360329711 +0100
+@@ -1,6 +1,6 @@
+ include_HEADERS =
+
+-AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include -I$(top_srcdir)/libsrc/interface
-DOPENGL -D$(TOGL_WINDOWINGSYSTEM) $(TCL_INCLUDES) $(MPI_INCLUDES)
$(FFMPEG_INCLUDES) $(JPEGLIB_INCLUDES)
++AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include -I$(top_srcdir)/libsrc/interface
-DOPENGL $(TCL_INCLUDES) $(MPI_INCLUDES) $(FFMPEG_INCLUDES) $(JPEGLIB_INCLUDES)
+
+
+ if NGGUI
+@@ -17,21 +17,18 @@
+ endif
+ # -lpardiso500-GNU472-X86-64 -lgfortran
+
+-netgen_LDADD = $(top_builddir)/libsrc/visualization/libvisual.la \
+- $(top_builddir)/libsrc/csg/libcsgvis.la \
+- $(top_builddir)/libsrc/csg/libcsg.la \
+- $(top_builddir)/libsrc/interface/libinterface.la \
+- $(top_builddir)/libsrc/meshing/libmesh.la \
+- -L$(TK_BIN_DIR)/Togl1.7 $(TOGLLIBDIR) -lTogl $(LIBGLU) $(TK_LIB_SPEC)
$(TCL_LIB_SPEC) $(MPI_LIBS) $(FFMPEG_LIBS) $(JPEGLIB_LIBS) $(PKG_LIBS)
$(MKL_LIBS)
+-
+-
+-#
+-# $(top_builddir)/libsrc/occ/liboccvis.la
+-# $(top_builddir)/libsrc/occ/libocc.la
+-# $(top_builddir)/libsrc/stlgeom/libstlvis.la
+-# $(top_builddir)/libsrc/stlgeom/libstl.la
+-# $(top_builddir)/libsrc/geom2d/libgeom2d.la
+-# $(top_builddir)/libsrc/geom2d/libgeom2dvis.la
++netgen_LDADD = $(top_builddir)/libsrc/visualization/libngvisual.la \
++ $(top_builddir)/libsrc/csg/libngcsgvis.la \
++ $(top_builddir)/libsrc/csg/libngcsg.la \
++ $(top_builddir)/libsrc/interface/libnginterface.la \
++ $(top_builddir)/libsrc/meshing/libngmesh.la \
++ $(top_builddir)/libsrc/occ/libngoccvis.la \
++ $(top_builddir)/libsrc/occ/libngocc.la \
++ $(top_builddir)/libsrc/stlgeom/libngstlvis.la \
++ $(top_builddir)/libsrc/stlgeom/libngstl.la \
++ $(top_builddir)/libsrc/geom2d/libnggeom2d.la \
++ $(top_builddir)/libsrc/geom2d/libnggeom2dvis.la \
++ -L$(TK_BIN_DIR)/Togl1.7 $(TOGLLIBDIR) -lTogl1.7 -ldl -lX11 $(LIBGLU)
$(TK_LIB_SPEC) $(TCL_LIB_SPEC) $(MPI_LIBS) $(FFMPEG_LIBS) $(JPEGLIB_LIBS)
$(PKG_LIBS) $(MKL_LIBS)
+
+
+ # add for static linkage of ngsolve:
+diff -uwrN -x.git netgen-5.3.1/ng/Makefile.in netgen/ng/Makefile.in
+--- netgen-5.3.1/ng/Makefile.in 2016-02-21 21:40:41.856331653 +0100
++++ netgen/ng/Makefile.in 2016-02-21 21:39:31.361329711 +0100
+@@ -302,7 +302,7 @@
+ include_HEADERS =
+ AM_CPPFLAGS = -I$(top_srcdir)/libsrc/include \
+ -I$(top_srcdir)/libsrc/interface -DOPENGL \
+- -D$(TOGL_WINDOWINGSYSTEM) $(TCL_INCLUDES) $(MPI_INCLUDES) \
++ $(TCL_INCLUDES) $(MPI_INCLUDES) \
+ $(FFMPEG_INCLUDES) $(JPEGLIB_INCLUDES) $(am__append_1)
+ netgen_SOURCES = demoview.cpp ngappinit.cpp onetcl.cpp parallelfunc.cpp
ngpkg.cpp demoview.hpp parallelfunc.hpp togl_1_7.h
+ @NGMKL_TRUE@MKL_LIBS = -L$(MKLROOT)/lib/intel64 -lmkl_intel_lp64
-lmkl_gnu_thread -lmkl_core -lmkl_def
+diff -uwrN -x.git netgen-5.3.1/nglib/Makefile.am netgen/nglib/Makefile.am
+--- netgen-5.3.1/nglib/Makefile.am 2016-02-21 21:40:41.856331653 +0100
++++ netgen/nglib/Makefile.am 2016-02-21 21:39:31.362329711 +0100
+@@ -8,15 +8,15 @@
+ libnglib_la_SOURCES = nglib.cpp
+
+ libnglib_la_LIBADD = \
+- $(top_builddir)/libsrc/interface/libinterface.la \
+- $(top_builddir)/libsrc/geom2d/libgeom2d.la \
+- $(top_builddir)/libsrc/csg/libcsg.la \
+- $(top_builddir)/libsrc/stlgeom/libstl.la \
+- $(top_builddir)/libsrc/occ/libocc.la \
+- $(top_builddir)/libsrc/meshing/libmesh.la \
++ $(top_builddir)/libsrc/interface/libnginterface.la \
++ $(top_builddir)/libsrc/geom2d/libnggeom2d.la \
++ $(top_builddir)/libsrc/csg/libngcsg.la \
++ $(top_builddir)/libsrc/stlgeom/libngstl.la \
++ $(top_builddir)/libsrc/occ/libngocc.la \
++ $(top_builddir)/libsrc/meshing/libngmesh.la \
+ $(OCCLIBS) $(MPI_LIBS)
+
+-libnglib_la_LDFLAGS = -avoid-version
++libnglib_la_LDFLAGS = -release $(PACKAGE_VERSION)
+ # -rdynamic
+
+
+@@ -25,24 +25,24 @@
+
+ ng_vol_SOURCES = ng_vol.cpp
+ ng_vol_LDADD = libnglib.la \
+- $(top_builddir)/libsrc/interface/libinterface.la \
+- $(top_builddir)/libsrc/geom2d/libgeom2d.la \
+- $(top_builddir)/libsrc/csg/libcsg.la \
+- $(top_builddir)/libsrc/stlgeom/libstl.la \
+- $(top_builddir)/libsrc/occ/libocc.la \
+- $(top_builddir)/libsrc/meshing/libmesh.la \
++ $(top_builddir)/libsrc/interface/libnginterface.la \
++ $(top_builddir)/libsrc/geom2d/libnggeom2d.la \
++ $(top_builddir)/libsrc/csg/libngcsg.la \
++ $(top_builddir)/libsrc/stlgeom/libngstl.la \
++ $(top_builddir)/libsrc/occ/libngocc.la \
++ $(top_builddir)/libsrc/meshing/libngmesh.la \
+ $(OCCLIBS) $(MPI_LIBS)
+
+
+
+ ng_stl_SOURCES = ng_stl.cpp
+ ng_stl_LDADD = libnglib.la \
+- $(top_builddir)/libsrc/interface/libinterface.la \
+- $(top_builddir)/libsrc/geom2d/libgeom2d.la \
+- $(top_builddir)/libsrc/csg/libcsg.la \
+- $(top_builddir)/libsrc/stlgeom/libstl.la \
+- $(top_builddir)/libsrc/occ/libocc.la \
+- $(top_builddir)/libsrc/meshing/libmesh.la \
++ $(top_builddir)/libsrc/interface/libnginterface.la \
++ $(top_builddir)/libsrc/geom2d/libnggeom2d.la \
++ $(top_builddir)/libsrc/csg/libngcsg.la \
++ $(top_builddir)/libsrc/stlgeom/libngstl.la \
++ $(top_builddir)/libsrc/occ/libngocc.la \
++ $(top_builddir)/libsrc/meshing/libngmesh.la \
+ $(OCCLIBS) $(MPI_LIBS)
+
+ # ng_occ_SOURCES = ng_occ.cpp
diff --git a/sci-mathematics/netgen/files/netgen-5.x-metis-fixes.patch
b/sci-mathematics/netgen/files/netgen-5.x-metis-fixes.patch
new file mode 100644
index 0000000..cf59613
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-metis-fixes.patch
@@ -0,0 +1,102 @@
+--- netgen-5.3.1.ORIG/libsrc/meshing/parallelmesh.cpp 2014-08-29
11:54:05.000000000 +0200
++++ netgen/libsrc/meshing/parallelmesh.cpp 2016-02-20 23:07:00.350568182
+0100
+@@ -14,7 +14,7 @@
+
+ #if METIS_VER_MAJOR >= 5
+ #define METIS5
+- typedef idx_t idxtype;
++ typedef metis::idx_t idxtype;
+ #else
+ #define METIS4
+ typedef idxtype idx_t;
+@@ -794,10 +794,10 @@
+ eptr.Append (eind.Size());
+ Array<idx_t> epart(ne), npart(nn);
+
+- int nparts = ntasks-1;
+- int edgecut;
++ metis::idx_t nparts = ntasks-1;
++ metis::idx_t edgecut;
+
+- int ncommon = 3;
++ metis::idx_t ncommon = 3;
+ METIS_PartMeshDual (&ne, &nn, &eptr[0], &eind[0], NULL, NULL, &ncommon,
&nparts,
+ NULL, NULL,
+ &edgecut, &epart[0], &npart[0]);
+@@ -1029,11 +1029,11 @@
+ eptr.Append (eind.Size());
+ Array<idx_t> epart(ne), npart(nn);
+
+- int nparts = ntasks-1;
+- int edgecut;
++ metis::idx_t nparts = ntasks-1;
++ metis::idx_t edgecut;
+
+
+- int ncommon = 3;
++ metis::idx_t ncommon = 3;
+ METIS_PartMeshDual (&ne, &nn, &eptr[0], &eind[0], &nwgt[0], NULL,
&ncommon, &nparts,
+ NULL, NULL,
+ &edgecut, &epart[0], &npart[0]);
+@@ -1266,7 +1266,7 @@
+
+ for ( int vert = 0; vert < nn; vert++ )
+ {
+- FlatArray<int> array ( cnt[vert], &adjacency[ xadj[vert] ] );
++ FlatArray<metis::idx_t> array ( cnt[vert], &adjacency[ xadj[vert] ] );
+ BubbleSort(array);
+ }
+
+@@ -1318,7 +1318,7 @@
+ idxtype *xadj, * adjacency, *v_weights = NULL, *e_weights = NULL;
+
+ int weightflag = 0;
+- // int numflag = 0;
++ int numflag = 0;
+ int nparts = ntasks - 1;
+
+ int options[5];
+@@ -1377,7 +1377,7 @@
+
+ for ( int el = 0; el < ne; el++ )
+ {
+- FlatArray<int> array ( cnt[el], &adjacency[ xadj[el] ] );
++ FlatArray<metis::idx_t> array ( cnt[el], &adjacency[ xadj[el] ] );
+ BubbleSort(array);
+ }
+
+@@ -1428,8 +1428,8 @@
+ void Mesh :: PartDualHybridMesh2D ( )
+ {
+ #ifdef METIS
+- int ne = GetNSE();
+- int nv = GetNV();
++ metis::idx_t ne = GetNSE();
++ metis::idx_t nv = GetNV();
+
+ Array<idxtype> xadj(ne+1);
+ Array<idxtype> adjacency(ne*4);
+@@ -1484,18 +1484,18 @@
+
+ idxtype *v_weights = NULL, *e_weights = NULL;
+
+- int weightflag = 0;
+- // int numflag = 0;
+- int nparts = ntasks - 1;
++ metis::idx_t weightflag = 0;
++ metis::idx_t numflag = 0;
++ metis::idx_t nparts = ntasks - 1;
+
+- int edgecut;
++ metis::idx_t edgecut;
+ Array<idxtype> part(ne);
+
+ for ( int el = 0; el < ne; el++ )
+ BubbleSort (adjacency.Range (xadj[el], xadj[el+1]));
+
+ #ifdef METIS4
+- int options[5];
++ metis::idx_t options[5];
+ options[0] = 0;
+ METIS_PartGraphKway ( &ne, &xadj[0], &adjacency[0], v_weights, e_weights,
&weightflag,
+ &numflag, &nparts, options, &edgecut, &part[0] );
diff --git a/sci-mathematics/netgen/files/netgen-5.x-missing-define.patch
b/sci-mathematics/netgen/files/netgen-5.x-missing-define.patch
new file mode 100644
index 0000000..d9d8f99
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-missing-define.patch
@@ -0,0 +1,38 @@
+--- a/libsrc/occ/Partition_Loop2d.cxx 2012-11-14 21:16:22.876287910 +0100
++++ b/libsrc/occ/Partition_Loop2d.cxx 2012-11-14 21:22:30.909650554 +0100
+@@ -13,6 +13,7 @@
+
+ //using namespace std;
+ #include <climits>
++#include <cmath>
+ #include "Partition_Loop2d.ixx"
+
+ #include "utilities.h"
+@@ -210,7 +211,7 @@
+ Cc->D1(uc, PC, CTg1);
+ if (!isForward) CTg1.Reverse();
+
+- Standard_Real anglemin = 3 * PI, tolAng = 1.e-8;
++ Standard_Real anglemin = 3 * M_PI, tolAng = 1.e-8;
+
+ // select an edge whose first derivative is most left of CTg1
+ // ie an angle between Tg1 and CTg1 is least
+@@ -234,7 +235,7 @@
+ // -PI < angle < PI
+ Standard_Real angle = Tg1.Angle(CTg1);
+
+- if (PI - Abs(angle) <= tolAng)
++ if (M_PI - Abs(angle) <= tolAng)
+ {
+ // an angle is too close to PI; assure that an angle sign really
+ // reflects an edge position: +PI - an edge is worst,
+--- a/configure.ac 2012-11-15 14:55:45.048938870 +0100
++++ b/configure.ac 2012-11-15 14:55:12.545923777 +0100
+@@ -14,6 +14,7 @@
+ AC_DISABLE_STATIC
+
+ AC_LANG([C++])
++AM_PROG_AR
+ AC_PROG_CXX
+ AC_PROG_LIBTOOL
+ LT_INIT
diff --git a/sci-mathematics/netgen/files/netgen-5.x-occ-stl-api-change.patch
b/sci-mathematics/netgen/files/netgen-5.x-occ-stl-api-change.patch
new file mode 100644
index 0000000..0452d6b
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-occ-stl-api-change.patch
@@ -0,0 +1,94 @@
+--- a/libsrc/occ/occgeom.cpp 2014-08-29 11:54:03.000000000 +0200
++++ b/libsrc/occ/occgeom.cpp 2016-02-12 21:14:49.258982206 +0100
+@@ -149,7 +149,7 @@
+
+ for (exp0.Init (shape, TopAbs_FACE); exp0.More(); exp0.Next())
+ {
+- // Variable to hold the colour (if there exists one) of
++ // Variable to hold the colour (if there exists one) of
+ // the current face being processed
+ Quantity_Color face_colour;
+
+@@ -190,7 +190,7 @@
+ rebuild->Replace(face, newface, Standard_False);
+ }
+
+- // Set the original colour of the face to the newly created
++ // Set the original colour of the face to the newly created
+ // face (after the healing process)
+ face = TopoDS::Face (exp0.Current());
+ face_colours->SetColor(face,face_colour,XCAFDoc_ColorSurf);
+@@ -815,11 +815,11 @@
+ face_maxh.SetSize (fmap.Extent());
+ face_maxh = mparam.maxh;
+
+- // Philippose - 15/01/2010
+- face_maxh_modified.DeleteAll();
+- face_maxh_modified.SetSize(fmap.Extent());
++ // Philippose - 15/01/2010
++ face_maxh_modified.DeleteAll();
++ face_maxh_modified.SetSize(fmap.Extent());
+ face_maxh_modified = 0;
+-
++
+
+ // Philippose - 17/01/2009
+ face_sel_status.DeleteAll();
+@@ -845,7 +845,7 @@
+ cout << "Trying to sew faces ..." << flush;
+
+ BRepOffsetAPI_Sewing sewedObj(1);
+-
++
+ for (int i = 1; i <= fmap.Extent(); i++)
+ {
+ TopoDS_Face face = TopoDS::Face (fmap(i));
+@@ -1038,9 +1038,6 @@
+ {
+ cout << "writing stl..."; cout.flush();
+ StlAPI_Writer writer;
+- writer.RelativeMode() = Standard_False;
+-
+- writer.SetDeflection(0.02);
+ writer.Write(shape,filename);
+
+ cout << "done" << endl;
+@@ -1109,7 +1106,7 @@
+ }
+
+
+- // For the IGES Reader, all the shapes can be exported as one compund
shape
++ // For the IGES Reader, all the shapes can be exported as one compund
shape
+ // using the "OneShape" member
+ occgeo->shape = reader.OneShape();
+ occgeo->face_colours = iges_colour_contents;
+@@ -1187,7 +1184,7 @@
+ }
+
+
+- // For the STEP File Reader in OCC, the 1st Shape contains the entire
++ // For the STEP File Reader in OCC, the 1st Shape contains the entire
+ // compound geometry as one shape
+ occgeo->shape = step_shape_contents->GetShape(step_shapes.Value(1));
+ occgeo->face_colours = step_colour_contents;
+@@ -1218,7 +1215,7 @@
+ }
+
+ // Philippose - 23/02/2009
+- // Fixed a bug in the OpenCascade XDE Colour handling when
++ // Fixed a bug in the OpenCascade XDE Colour handling when
+ // opening BREP Files, since BREP Files have no colour data.
+ // Hence, the face_colours Handle needs to be created as a NULL handle.
+ occgeo->face_colours = Handle_XCAFDoc_ColorTool();
+@@ -1236,9 +1233,9 @@
+ void OCCGeometry :: Save (string sfilename) const
+ {
+ const char * filename = sfilename.c_str();
+- if (strlen(filename) < 4)
++ if (strlen(filename) < 4)
+ throw NgException ("illegal filename");
+-
++
+ if (strcmp (&filename[strlen(filename)-3], "igs") == 0)
+ {
+ IGESControl_Writer writer("millimeters", 1);
diff --git a/sci-mathematics/netgen/files/netgen-5.x-parallelmetis4-fix.patch
b/sci-mathematics/netgen/files/netgen-5.x-parallelmetis4-fix.patch
new file mode 100644
index 0000000..0170fb8
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen-5.x-parallelmetis4-fix.patch
@@ -0,0 +1,36 @@
+diff -uwrN -x.git netgen-5.3.1/libsrc/meshing/parallelmesh.cpp
netgen/libsrc/meshing/parallelmesh.cpp
+--- netgen-5.3.1/libsrc/meshing/parallelmesh.cpp 2016-02-22
00:22:28.885598956 +0100
++++ netgen/libsrc/meshing/parallelmesh.cpp 2016-02-22 00:46:17.030638283
+0100
+@@ -962,10 +962,15 @@
+ }
+
+
+-#ifdef METIS5
++#ifdef METIS
+ void Mesh :: ParallelMetis (Array<int> & volume_weights , Array<int> &
surface_weights, Array<int> & segment_weights)
+ {
++
++ #ifdef METIS5
+ PrintMessage (3, "call metis 5 with weights ...");
++ #else
++ PrintMessage (3, "call metis 4 with weights ...");
++ #endif
+
+ // cout << "segment_weights " << segment_weights << endl;
+ // cout << "surface_weights " << surface_weights << endl;
+@@ -1034,9 +1039,15 @@
+
+
+ metis::idx_t ncommon = 3;
++ #ifdef METIS5
+ METIS_PartMeshDual (&ne, &nn, &eptr[0], &eind[0], &nwgt[0], NULL,
&ncommon, &nparts,
+ NULL, NULL,
+ &edgecut, &epart[0], &npart[0]);
++ #else
++ int numflag = 0;
++ METIS_PartMeshDual (&ne, &nn, &eptr[0], &eind[0], &numflag, &nparts,
++ &edgecut, &epart[0], &npart[0]);
++ #endif
+ /*
+ METIS_PartMeshNodal (&ne, &nn, &eptr[0], &eind[0], NULL, NULL, &nparts,
+ NULL, NULL,
diff --git a/sci-mathematics/netgen/files/netgen.desktop
b/sci-mathematics/netgen/files/netgen.desktop
new file mode 100644
index 0000000..714ba53
--- /dev/null
+++ b/sci-mathematics/netgen/files/netgen.desktop
@@ -0,0 +1,8 @@
+[Desktop Entry]
+Name=Netgen
+Comment=3D modeling, Mesh generation.
+Exec=/usr/bin/netgen
+Icon=netgen
+Terminal=false
+Type=Application
+Categories=Graphics;
diff --git a/sci-mathematics/netgen/files/netgen.png
b/sci-mathematics/netgen/files/netgen.png
new file mode 100644
index 0000000..cb2fd84
Binary files /dev/null and b/sci-mathematics/netgen/files/netgen.png differ
diff --git a/sci-mathematics/netgen/metadata.xml
b/sci-mathematics/netgen/metadata.xml
new file mode 100644
index 0000000..7811ed6
--- /dev/null
+++ b/sci-mathematics/netgen/metadata.xml
@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <maintainer type="project">
+ <email>[email protected]</email>
+ <name>Gentoo Mathematics Project</name>
+ </maintainer>
+ <use>
+ <flag name="opencascade"> Enable OpenCASCADE support</flag>
+ </use>
+ <upstream>
+ <remote-id type="sourceforge">netgen-mesher</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/sci-mathematics/netgen/netgen-5.3.1-r1.ebuild
b/sci-mathematics/netgen/netgen-5.3.1-r1.ebuild
new file mode 100644
index 0000000..9ca14d2
--- /dev/null
+++ b/sci-mathematics/netgen/netgen-5.3.1-r1.ebuild
@@ -0,0 +1,126 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools eutils flag-o-matic multilib versionator
+
+MY_PN=${PN}-mesher
+MY_PV=$(get_version_component_range 1-2)
+DESCRIPTION="Automatic 3d tetrahedral mesh generator"
+HOMEPAGE="http://www.hpfem.jku.at/netgen/";
+SRC_URI="mirror://sourceforge/project/${MY_PN}/${MY_PN}/${MY_PV}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="LGPL-2.1"
+KEYWORDS="~amd64 ~x86"
+IUSE="-ffmpeg jpeg -mpi opencascade openmp source"
+
+DEPEND="
+ dev-lang/tcl:0
+ dev-lang/tk:0
+ dev-tcltk/tix
+ dev-tcltk/togl:1.7
+ virtual/opengl
+ x11-libs/libX11
+ x11-libs/libXmu
+ opencascade? ( sci-libs/opencascade:* )
+ ffmpeg? ( media-video/ffmpeg )
+ jpeg? ( virtual/jpeg:0= )
+ mpi? ( virtual/mpi || ( sci-libs/parmetis <sci-libs/metis-5.0 )
opencascade? ( sci-libs/hdf5[mpi] ) ) "
+RDEPEND="${DEPEND}"
+# Note, MPI has not be tested.
+
+PATCHES=(
+ # Adapted from
http://sourceforge.net/projects/netgen-mesher/forums/forum/905307/topic/5422824
+ "${FILESDIR}"/${PN}-5.x-missing-define.patch
+ # Adapted from
http://pkgs.fedoraproject.org/cgit/rpms/netgen-mesher.git/tree/netgen-5.3.0_metis.patch
+ "${FILESDIR}"/${PN}-5.x-metis-fixes.patch
+ "${FILESDIR}"/${PN}-5.x-occ-stl-api-change.patch
+ # Adapted from
http://pkgs.fedoraproject.org/cgit/rpms/netgen-mesher.git/tree/netgen-5.3.1_build.patch
+ "${FILESDIR}"/${PN}-5.x-makefiles-fixes.patch
+ # Adapted from
http://pkgs.fedoraproject.org/cgit/rpms/netgen-mesher.git/tree/netgen-5.3.0_fixes.patch
+ "${FILESDIR}"/${PN}-5.x-fedora-fixes.patch
+ "${FILESDIR}"/${PN}-5.x-includes-fixes.patch
+ "${FILESDIR}"/${PN}-5.x-parallelmetis4-fix.patch
+)
+
+src_prepare() {
+ default
+ if use mpi; then
+ export CC=mpicc
+ export CXX=mpic++
+ export FC=mpif90
+ export F90=mpif90
+ export F77=mpif77
+ fi
+ eautoreconf
+}
+
+src_configure() {
+ # This is not the most clever way to deal with these flags
+ # but --disable-xxx does not seem to work correcly, so...
+ local myconf=( --with-togl=/usr/$(get_libdir)/Togl1.7 )
+
+ myconf+=( $(use_enable openmp) )
+
+ if use opencascade; then
+ myconf+=( --enable-occ --with-occ=$CASROOT )
+ append-ldflags -L$CASROOT/$(get_libdir)
+ fi
+ if use mpi; then
+ ewarn
"*************************************************************************"
+ ewarn ""
+ ewarn "MPI has not been tested, you should probably deactivate
the mpi use flag"
+ ewarn ""
+ ewarn
"*************************************************************************"
+ myconf+=( --enable-parallel )
+ append-cppflags -I/usr/include/metis
+ append-ldflags -L/usr/$(get_libdir)/openmpi/
+ fi
+ use ffmpeg && myconf+=( --enable-ffmpeg )
+ use jpeg && myconf+=( --enable-jpeglib )
+ append-cppflags -I/usr/include/togl-1.7
+
+ econf \
+ ${myconf[@]}
+
+ # This would be the more elegant way:
+# econf \
+# $(use_enable opencascade occ) \
+# $(use_with opencascade "occ=$CASROOT") \
+# $(use_enable mpi parallel) \
+# $(use_enable ffmpeg) \
+# $(use_enable jpeg jpeglib)
+}
+
+src_install() {
+ local NETGENDIR="/usr/share/netgen"
+
+ echo -e "NETGENDIR=${NETGENDIR} \nLDPATH=/usr/$(get_libdir)/Togl1.7" >
./99netgen
+ doenvd 99netgen
+
+ default
+ mv "${D}"/usr/bin/{*.tcl,*.ocf} "${D}${NETGENDIR}" || die
+
+ # Install icon and .desktop for menu entry
+ doicon "${FILESDIR}"/${PN}.png
+ domenu "${FILESDIR}"/${PN}.desktop
+
+ prune_libtool_files
+
+ if use source ; then
+ emake clean
+ insinto "${NETGENDIR}"
+ doins -r libsrc
+ fi
+}
+
+pkg_postinst() {
+ elog "Please make sure to update your environment variables:"
+ elog "env-update && source /etc/profile"
+ elog "Netgen ebuild is still under development."
+ elog "Help us improve the ebuild in:"
+ elog "http://bugs.gentoo.org/show_bug.cgi?id=155424";
+}
