commit: 64dcae2a7b0f8bdbf5a737b2a440c95376e99ba6 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Apr 24 13:50:09 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Apr 24 13:50:09 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=64dcae2a
sci-biology/stringtie: new package Package-Manager: portage-2.2.28 sci-biology/stringtie/metadata.xml | 12 ++++++++++++ sci-biology/stringtie/stringtie-1.2.2.ebuild | 28 ++++++++++++++++++++++++++++ 2 files changed, 40 insertions(+) diff --git a/sci-biology/stringtie/metadata.xml b/sci-biology/stringtie/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/stringtie/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/stringtie/stringtie-1.2.2.ebuild b/sci-biology/stringtie/stringtie-1.2.2.ebuild new file mode 100644 index 0000000..f948342 --- /dev/null +++ b/sci-biology/stringtie/stringtie-1.2.2.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +DESCRIPTION="Transcriptome assembler and RNA-Seq analysis using BAM files (like cufflinks)" +HOMEPAGE="https://ccb.jhu.edu/software/stringtie + https://github.com/gpertea/stringtie"; +SRC_URI="http://ccb.jhu.edu/software/stringtie/dl/${P}.tar.gz"; + +LICENSE="Artistic-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +# contains bundled gclib +DEPEND="sci-biology/samtools:0.1-legacy" # bundled samtools-0.1.18 +RDEPEND="${DEPEND}" + +src_compile(){ + emake release +} + +src_install(){ + dobin stringtie + dodoc README +}
