commit: 801ae3ef893596610f23cd6860a4fdff4684e583
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 24 09:30:49 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 24 09:30:49 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=801ae3ef
sci-biology/smalt: document unclear instakll steps, fix DESCRIPTION
Package-Manager: portage-2.2.28
sci-biology/smalt/smalt-0.7.6.ebuild | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/sci-biology/smalt/smalt-0.7.6.ebuild
b/sci-biology/smalt/smalt-0.7.6.ebuild
index 9fd8f0e..19d8588 100644
--- a/sci-biology/smalt/smalt-0.7.6.ebuild
+++ b/sci-biology/smalt/smalt-0.7.6.ebuild
@@ -7,7 +7,7 @@ EAPI=5
MY_PN="${PN%-bin}"
MY_P="${MY_PN}-${PV}"
-DESCRIPTION="Successor of ssaha2: pairwise sequence alignment mapping DNA
reads"
+DESCRIPTION="DNA read mapper using k=20 (successor of ssaha2)"
HOMEPAGE="http://www.sanger.ac.uk/resources/software/smalt/";
SRC_URI="http://sourceforge.net/projects/${PN}/files/${P}.tar.gz";
@@ -16,6 +16,14 @@ SLOT="0"
KEYWORDS="~amd64"
IUSE=""
+DEPEND=""
+RDEPEND="${DEPEND}"
+# TODO: add https://github.com/gt1/bambamc dependency
+# ./configure --with-bambamc=yes
BAMBAMC_CFLAGS="-I$BAMBAMC_INSTALL_DIR/include"
BAMBAMC_LIBS="-L$BAMBAMC_INSTALL_DIR/lib -lbambamc"
+#
+# but NEWS states
+# - Ammended installation instructions with the bambamc library.
+
S="${WORKDIR}"/${MY_P}
src_install(){
