commit: 8be57c3dd770be3cbb37ecf5798f515bfd25ae3f Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sun Apr 24 07:25:43 2016 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Apr 24 07:25:43 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8be57c3d
LICENSE unknown Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/cap3-bin/cap3-bin-20071015.ebuild | 44 --------------------------- sci-biology/cap3-bin/cap3-bin-20150210.ebuild | 42 ------------------------- sci-biology/cap3-bin/metadata.xml | 13 -------- 3 files changed, 99 deletions(-) diff --git a/sci-biology/cap3-bin/cap3-bin-20071015.ebuild b/sci-biology/cap3-bin/cap3-bin-20071015.ebuild deleted file mode 100644 index 7e53b9c..0000000 --- a/sci-biology/cap3-bin/cap3-bin-20071015.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -DESCRIPTION="CAP3 is for small-scale assembly of EST sequences with or without quality value" -HOMEPAGE="http://seq.cs.iastate.edu"; -# These exist currently and contain version 20071221: -# http://seq.cs.iastate.edu/CAP3/cap3.linux.tar -# http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.tar -# http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar - -# The /pub/ directory is gone although contained same version of binaries but for some different platforms: -# http://seq.cs.iastate.edu/pub/CAP3/cap3.linux.tar -# http://seq.cs.iastate.edu/pub/CAP3/cap3.linux.i686_xeon64.tar -# http://seq.cs.iastate.edu/pub/CAP3/cap3.linux.opteron64.tar -# http://seq.cs.iastate.edu/pub/CAP3/cap3.linux.itanium.tar -# http://seq.cs.iastate.edu/pub/CAP3/cap3.linux.powerpc32.tar -# http://seq.cs.iastate.edu/pub/CAP3/cap3.linux.powerpc64.tar -SRC_URI=" - x86? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.tar ) - amd64? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.tar )" - -LICENSE="" # only for academic use -SLOT="0" -KEYWORDS="" -IUSE="" - -S="${WORKDIR}/CAP3" - -src_install() { - exeinto /opt/${PN} - doexe cap3 formcon - dosym ../${PN}/cap3 /opt/bin/cap3 - dosym ../${PN}/formcon /opt/bin/formcon - dodoc README - newdoc doc cap3.txt - # other examples - # http://seq.cs.iastate.edu/pub/CAP3/data.tar - dodir /usr/share/cap3/examples - insinto /usr/share/cap3 - doins -r example -} diff --git a/sci-biology/cap3-bin/cap3-bin-20150210.ebuild b/sci-biology/cap3-bin/cap3-bin-20150210.ebuild deleted file mode 100644 index 40d88b6..0000000 --- a/sci-biology/cap3-bin/cap3-bin-20150210.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -DESCRIPTION="CAP3 is for small-scale assembly of EST sequences with or without quality value" -HOMEPAGE="http://seq.cs.iastate.edu"; -# These exist currently and contain version 20071221: -# http://seq.cs.iastate.edu/CAP3/cap3.linux.tar -# http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.tar -# http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar - -# The /pub/ directory is gone although contained same version of binaries but for some different platforms: -# http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar -# http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.taran old version (2009) - -SRC_URI=" - x86? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.tar ) - amd64? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar )" - -LICENSE="" # only for academic use -SLOT="0" -KEYWORDS="" -IUSE="" - -S="${WORKDIR}/CAP3" - -src_install() { - exeinto /opt/${PN} - doexe cap3 formcon - dosym ../${PN}/cap3 /opt/bin/cap3 - dosym ../${PN}/formcon /opt/bin/formcon - dodoc README - newdoc doc.txt cap3.txt - newdoc aceform ACE_file_format.txt - # other examples - # http://seq.cs.iastate.edu/pub/CAP3/data.tar - dodir /usr/share/cap3/examples - insinto /usr/share/cap3 - doins -r example -} diff --git a/sci-biology/cap3-bin/metadata.xml b/sci-biology/cap3-bin/metadata.xml deleted file mode 100644 index 67c64b4..0000000 --- a/sci-biology/cap3-bin/metadata.xml +++ /dev/null @@ -1,13 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription>CAP3 is an EST (Expressed Sequence Tag) assembler, coping with alternatively spliced variants</longdescription> -</pkgmetadata>
