commit: b3b06688c38bc3f28d68be75e5e30ff1adcb1386 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sat Apr 9 22:14:19 2016 +0000 Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de> CommitDate: Sat Apr 9 22:14:19 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3b06688
sci-biology/pysam: Remove old, latest 0.9.0 in main tree Package-Manager: portage-2.2.28 sci-biology/pysam/pysam-0.6-r2.ebuild | 26 -------------------------- sci-biology/pysam/pysam-0.8.3.ebuild | 29 ----------------------------- sci-biology/pysam/pysam-0.8.4.ebuild | 27 --------------------------- 3 files changed, 82 deletions(-) diff --git a/sci-biology/pysam/pysam-0.6-r2.ebuild b/sci-biology/pysam/pysam-0.6-r2.ebuild deleted file mode 100644 index 01f86da..0000000 --- a/sci-biology/pysam/pysam-0.6-r2.ebuild +++ /dev/null @@ -1,26 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI="5" - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" -HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam"; -SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}] - <=sci-biology/samtools-0.1.18[${PYTHON_USEDEP}]" - -python_compile() { - python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing" - distutils-r1_python_compile -} diff --git a/sci-biology/pysam/pysam-0.8.3.ebuild b/sci-biology/pysam/pysam-0.8.3.ebuild deleted file mode 100644 index a08855f..0000000 --- a/sci-biology/pysam/pysam-0.8.3.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI="5" - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" -HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"; -SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}] - >=sci-biology/samtools-1.2[${PYTHON_USEDEP}] - >=sci-libs/htslib-1.2.1" - -PATCHES=( "${FILESDIR}/${P}-cython-0.23.patch" ) - -python_compile() { - python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing" - distutils-r1_python_compile -} diff --git a/sci-biology/pysam/pysam-0.8.4.ebuild b/sci-biology/pysam/pysam-0.8.4.ebuild deleted file mode 100644 index 2b4d3d9..0000000 --- a/sci-biology/pysam/pysam-0.8.4.ebuild +++ /dev/null @@ -1,27 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI="5" - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" -HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"; -SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}] - >=sci-biology/samtools-1.2[${PYTHON_USEDEP}] - >=sci-libs/htslib-1.2.1" - -python_compile() { - python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing" - distutils-r1_python_compile -}
