commit: e1714efc4d71beec0428f59ae0fa6ec7b166bd0a
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Apr 11 19:43:14 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Apr 11 19:43:14 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e1714efc
sci-biology/trinityrnaseq: adjust to sci-biology/samtools using SLOTs now;
installation suffers file collision on /usr/bin/fasta_tool , see usptream
github issue #126
Package-Manager: portage-2.2.28
sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild | 2 +-
sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild | 2 +-
.../{trinityrnaseq-2.1.1.ebuild => trinityrnaseq-2.2.0.ebuild} | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
index 0e93c19..226fa17 100644
--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
@@ -23,7 +23,7 @@ DEPEND=""
RDEPEND="${DEPEND}
sci-biology/parafly
=sci-biology/jellyfish-2.1.4
- sci-biology/samtools
+ sci-biology/samtools:0.1-legacy
>=sci-biology/GAL-0.2.1
dev-perl/IO-All"
# ReleaseNotes mentions that <sci-biology/samtools-1.1 is needed
diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
b/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
index b383de4..218e4c3 100644
--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
@@ -23,7 +23,7 @@ RDEPEND="${DEPEND}
sci-biology/parafly
=sci-biology/jellyfish-2.1.4
>=sci-libs/htslib-1.2.1
- <=sci-biology/samtools-1.1
+ sci-biology/samtools:0.1-legacy
>=sci-biology/trimmomatic-0.32
>=sci-biology/GAL-0.2.1
dev-perl/IO-All"
diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
b/sci-biology/trinityrnaseq/trinityrnaseq-2.2.0.ebuild
similarity index 98%
copy from sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
copy to sci-biology/trinityrnaseq/trinityrnaseq-2.2.0.ebuild
index b383de4..218e4c3 100644
--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild
+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.2.0.ebuild
@@ -23,7 +23,7 @@ RDEPEND="${DEPEND}
sci-biology/parafly
=sci-biology/jellyfish-2.1.4
>=sci-libs/htslib-1.2.1
- <=sci-biology/samtools-1.1
+ sci-biology/samtools:0.1-legacy
>=sci-biology/trimmomatic-0.32
>=sci-biology/GAL-0.2.1
dev-perl/IO-All"
