commit: fba69b3c82862f7b4673420bbfc4f1e57b6a2971
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr 8 12:52:27 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr 8 12:52:27 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fba69b3c
sci-biology/sailfish: version bump; noted bundled 3rd-party code
Package-Manager: portage-2.2.28
...t-static.patch => sailfish-0.9.2-no-boost-static.patch} | 0
.../{sailfish-0.9.1.ebuild => sailfish-0.9.2.ebuild} | 14 ++++++++++++--
2 files changed, 12 insertions(+), 2 deletions(-)
diff --git a/sci-biology/sailfish/files/sailfish-0.9.1-no-boost-static.patch
b/sci-biology/sailfish/files/sailfish-0.9.2-no-boost-static.patch
similarity index 100%
rename from sci-biology/sailfish/files/sailfish-0.9.1-no-boost-static.patch
rename to sci-biology/sailfish/files/sailfish-0.9.2-no-boost-static.patch
diff --git a/sci-biology/sailfish/sailfish-0.9.1.ebuild
b/sci-biology/sailfish/sailfish-0.9.2.ebuild
similarity index 60%
rename from sci-biology/sailfish/sailfish-0.9.1.ebuild
rename to sci-biology/sailfish/sailfish-0.9.2.ebuild
index 8a1b1c0..6350ef6 100644
--- a/sci-biology/sailfish/sailfish-0.9.1.ebuild
+++ b/sci-biology/sailfish/sailfish-0.9.2.ebuild
@@ -10,17 +10,27 @@ DESCRIPTION="Rapid Mapping-based Isoform Quantification
from RNA-Seq Reads"
HOMEPAGE="http://www.cs.cmu.edu/~ckingsf/software/sailfish/";
SRC_URI="https://github.com/kingsfordgroup/${PN}/archive/v${PV}.tar.gz ->
${P}.tar.gz"
-LICENSE="GPL-3"
+LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
-PATCHES=( "${FILESDIR}"/${PN}-0.9.1-no-boost-static.patch )
+PATCHES=( "${FILESDIR}"/${P}-no-boost-static.patch )
DEPEND="dev-libs/boost:0
dev-libs/jemalloc
dev-cpp/tbb"
RDEPEND="${DEPEND}"
+# a C++-11 compliant compiler is needs, aka >=gcc-4.7
+
+# TODO: disable
+# [ 7%] Performing download step (verify and extract) for 'libdivsufsort'
+#i
+# contains bundled RapMap
+# contains bundled libdivsufsort-master
+# contains bundled libgff
+# contains bundled jellyfish-2.2.3
+# contains bundled sparsehash-sparsehash-2.0.2
src_install() {
cmake-utils_src_install
