commit: fdadb1aefebd39ecb3836948d4008deba80cb903 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Mar 30 14:35:37 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Mar 30 14:35:37 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fdadb1ae
sci-biology/perga: added some LICENSE, fix CFLAGS Package-Manager: portage-2.2.28 sci-biology/perga/metadata.xml | 12 ++++++++++++ sci-biology/perga/perga-9999.ebuild | 36 ++++++++++++++++++++++++++++++++++++ 2 files changed, 48 insertions(+) diff --git a/sci-biology/perga/metadata.xml b/sci-biology/perga/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/perga/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/perga/perga-9999.ebuild b/sci-biology/perga/perga-9999.ebuild new file mode 100644 index 0000000..4f79d72 --- /dev/null +++ b/sci-biology/perga/perga-9999.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit git-r3 eutils toolchain-funcs + +DESCRIPTION="Paired End Reads Guided Assembler" +HOMEPAGE="https://github.com/hitbio/PERGA + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104"; +EGIT_REPO_URI="https://github.com/hitbio/PERGA.git"; + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +src_prepare(){ + sed -e "s/gcc -g /$(tc-getCC) ${CFLAGS} ${LDFLAGS} /" -i src/Makefile || die + sed -e 's/-Wl,-O1//' -i src/Makefile || die +} + +# does not compile with gcc-5.3.0 but 4.9.3 works +src_compile(){ + cd src || die + emake +} + +src_install(){ + dobin src/perga + dodoc README +}
