commit: 89b91efb19621ed16be8bf20cb05670120ec431d Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Mar 30 14:23:32 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Mar 30 14:23:32 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=89b91efb
sci-biology/artemis: install docs, cleanup ebuild and bring it in sync with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 sci-biology/artemis/artemis-9999.ebuild | 19 ++++++++++++++----- 1 file changed, 14 insertions(+), 5 deletions(-) diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild index 81da9cb..d9e915d 100644 --- a/sci-biology/artemis/artemis-9999.ebuild +++ b/sci-biology/artemis/artemis-9999.ebuild @@ -1,14 +1,15 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 inherit java-pkg-2 java-ant-2 git-r3 DESCRIPTION="DNA sequence viewer/annotation (Artemis) and comparison (ACT) tool" HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"; -SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf"; +SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf -> ${P}.manual.pdf + ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/art_html_build.zip -> ${P}.html_build.zip" EGIT_REPO_URI="https://github.com/sanger-pathogens/Artemis"; LICENSE="GPL-2" @@ -41,6 +42,10 @@ DEPEND="${RDEPEND} # BamView is at http://bamview.sourceforge.net/ +src_unpack(){ + unzip "${DISTDIR}"/art_html_build.zip || die +} + src_compile(){ ant || die } @@ -48,7 +53,9 @@ src_compile(){ src_install(){ dobin act act.command art dnaplotter gff2embl java-pkg_dojar ant-build/artemis.jar - dodoc "${DISTDIR}"/artemis.pdf README + dodoc "${DISTDIR}"/"${P}".manual.pdf README + insinto /usr/share/doc/"${PN}"/html + doins art_html_build/* } # artemis_compiled_v16.0.11.tar.gz contains compiled binaries but also java *.class files @@ -57,5 +64,7 @@ src_install(){ pkg_postinst(){ einfo "For BAM file support please install sci-biology/BamView" - einfo " from http://bamview.sourceforge.net"; + einfo "You may find interesting the additional web resources:" + einfo "http://www.webact.org/WebACT"; + einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html"; }
