commit: 91ae72dccfc97eb347ae0e04c9530d1b76d1acbe Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Mar 23 19:00:16 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Mar 23 19:00:16 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=91ae72dc
sci-biology/fgap: new package which needs either octave or matlab runtime Package-Manager: portage-2.2.26 sci-biology/fgap/fgap-1.8.1.ebuild | 26 ++++++++++++++++++++++++++ sci-biology/fgap/metadata.xml | 12 ++++++++++++ 2 files changed, 38 insertions(+) diff --git a/sci-biology/fgap/fgap-1.8.1.ebuild b/sci-biology/fgap/fgap-1.8.1.ebuild new file mode 100644 index 0000000..65430e9 --- /dev/null +++ b/sci-biology/fgap/fgap-1.8.1.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds" +HOMEPAGE="http://www.bioinfo.ufpr.br/fgap"; +SRC_URI="https://sourceforge.net/projects/fgap/files/fgap.m"; +# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371 + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" +IUSE="" + +# Matlab (R2012a) or Octave (3.6.2) +# +# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m + +# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz +# http://www.mathworks.com/products/compiler/mcr/index.html +DEPEND="" +RDEPEND="${DEPEND} + >=sci-biology/ncbi-tools+-2.2.28 + >=sci-mathematics/octave-3.6.2" diff --git a/sci-biology/fgap/metadata.xml b/sci-biology/fgap/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/fgap/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
