commit: 2307172a14e00538f1f06a89d2e629cc42483dbb Author: James Le Cuirot <chewi <AT> gentoo <DOT> org> AuthorDate: Sun Mar 6 12:55:18 2016 +0000 Commit: James Le Cuirot <chewi <AT> gentoo <DOT> org> CommitDate: Sun Mar 6 13:01:42 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2307172a
sci-biology/biojava: Remove outdated unmaintained package sci-biology/biojava/Manifest | 2 - sci-biology/biojava/biojava-1.6.ebuild | 73 ---------------------------------- sci-biology/biojava/biojava-1.7.ebuild | 73 ---------------------------------- sci-biology/biojava/metadata.xml | 12 ------ 4 files changed, 160 deletions(-) diff --git a/sci-biology/biojava/Manifest b/sci-biology/biojava/Manifest deleted file mode 100644 index 3a20f1c..0000000 --- a/sci-biology/biojava/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST biojava-1.6-all.jar 24571007 SHA256 2d10334fe6022d1b64219505ba4d2a32027ab7218d775878506d3e7c00f6ce7e SHA512 300bd6e02fe052c810c52cb2cc4255628bee704af187ad746b97e57941778dc3a1996b3917db021d74db8c716f94c90c94c5a5e2d4bc212c06259381045f3034 WHIRLPOOL e5a52aaa6e9a9d6780d5f55b6d164db07388e9c595296d4e4a11dc241aa0745fa726279d19a0c97d1966b0a14c06af2b9b588873ad522aeeff881534f0871f10 -DIST biojava-1.7-all.jar 28062592 SHA256 5c5e7fc66bc79a07494fb7d935164ec2aab50dc2effb7644f89bfa4fc907bb3f SHA512 867862b45f014bcd1afd37691e91b948ede05e96f84c7051953d32dad49908781235aad80301e22a15fa8b4145e80c78cf3935d6e581a2e60b56c9308f8adaa8 WHIRLPOOL 5669293ce362e82562454c5902d523e69f64d90e117e75b5de844e0ef5866d250507b86f78245ac82f19932ad9aa196ad17d96a3f703187a3ab2daf00893af9b diff --git a/sci-biology/biojava/biojava-1.6.ebuild b/sci-biology/biojava/biojava-1.6.ebuild deleted file mode 100644 index edfadac..0000000 --- a/sci-biology/biojava/biojava-1.6.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -# TODO: -# -Fix javadoc generation OutOfMemoryError -# -Add launchers for 2 apps in biojava-apps.jar -# -Decide on demo packaging. (Whether to install its jar as done or sources by examples USE flag) - -EAPI=2 - -#JAVA_PKG_IUSE="doc source test" -JAVA_PKG_IUSE="source test" - -inherit eutils java-pkg-2 java-ant-2 - -DESCRIPTION="A Java framework for processing biological data" -HOMEPAGE="http://biojava.org"; -SRC_URI="http://www.biojava.org/download/bj16/all/${P}-all.jar"; -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -COMMON_DEPEND="dev-java/jgrapht:0 - dev-java/commons-cli:1 - dev-java/commons-dbcp:0 - dev-java/commons-pool:0 - dev-java/bytecode:0" - -RDEPEND=">=virtual/jre-1.5 - ${COMMON_DEPEND}" -DEPEND=">=virtual/jdk-1.5 - app-arch/unzip - ${COMMON_DEPEND} - test? - ( - dev-java/junit:4 - dev-java/ant-junit4 - )" - -S="${WORKDIR}/biojava-live_${PV}" - -JAVA_ANT_IGNORE_SYSTEM_CLASSES="true" - -src_prepare() { - einfo "Removing budled jars." - find . -name "*.jar" -print -delete - rm -r doc/* - java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar - java-pkg_jar-from commons-cli-1 - java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar - java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar - java-pkg_jar-from bytecode -} - -src_compile() { - #ANT_OPTS="${ANT_OPTS} -Xmx512m" - eant package-biojava package-biojava package-demos package-apps #$(use_doc javadocs-all) -} - -src_install() { - java-pkg_newjar ant-build/biojava.jar ${PN}.jar - java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar - java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar - #use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos} - use source && java-pkg_dosrc {src,apps,demos}/org -} - -src_test() { - java-pkg_jar-from junit-4 junit.jar junit-4.4.jar - ANT_TASKS="ant-junit4" eant runtests -} diff --git a/sci-biology/biojava/biojava-1.7.ebuild b/sci-biology/biojava/biojava-1.7.ebuild deleted file mode 100644 index 77ff74c..0000000 --- a/sci-biology/biojava/biojava-1.7.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -# TODO: -# -Fix javadoc generation OutOfMemoryError -# -Add launchers for 2 apps in biojava-apps.jar -# -Decide on demo packaging. (Whether to install its jar as done or sources by examples USE flag) - -EAPI=2 - -#JAVA_PKG_IUSE="doc source test" -JAVA_PKG_IUSE="source test" - -inherit eutils java-pkg-2 java-ant-2 - -DESCRIPTION="A Java framework for processing biological data" -HOMEPAGE="http://biojava.org"; -SRC_URI="http://www.biojava.org/download/bj17/all/${P}-all.jar"; -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -COMMON_DEPEND="dev-java/jgrapht:0 - dev-java/commons-cli:1 - dev-java/commons-dbcp:0 - dev-java/commons-pool:0 - dev-java/commons-collections:0 - dev-java/bytecode:0" - -RDEPEND=">=virtual/jre-1.5 - ${COMMON_DEPEND}" -DEPEND=">=virtual/jdk-1.5 - app-arch/unzip - ${COMMON_DEPEND} - test? - ( - dev-java/junit:4 - dev-java/ant-junit4 - )" - -S="${WORKDIR}/biojava-${PV}" - -JAVA_ANT_IGNORE_SYSTEM_CLASSES="true" - -src_prepare() { - einfo "Removing bundled jars..." - find . -name "*.jar" -print -delete - java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar - java-pkg_jar-from commons-cli-1 - java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar - java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar - java-pkg_jar-from bytecode -} - -src_compile() { - #ANT_OPTS="${ANT_OPTS} -Xmx512m" - eant package-biojava package-biojava package-demos package-apps #$(use_doc javadocs-all) -} - -src_install() { - java-pkg_newjar ant-build/biojava.jar ${PN}.jar - java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar - java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar - #use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos} - use source && java-pkg_dosrc {src,apps,demos}/org -} - -src_test() { - java-pkg_jar-from junit-4 junit.jar junit-4.4.jar - ANT_TASKS="ant-junit4" eant runtests -} diff --git a/sci-biology/biojava/metadata.xml b/sci-biology/biojava/metadata.xml deleted file mode 100644 index 15eb934..0000000 --- a/sci-biology/biojava/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -<maintainer type="project"> - <email>[email protected]</email> - <name>Java</name> - </maintainer> -</pkgmetadata>
