commit: 10febb5681bdc497d34f2c58667e31124437fa65 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sun Feb 14 17:32:26 2016 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Feb 14 17:32:35 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=10febb56
sci-biology/angsd: Bump to EAPI=6 * Use git-r3.eclass Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/angsd/angsd-9999.ebuild | 41 +++++++++++++++++++------------------ sci-biology/angsd/metadata.xml | 2 +- 2 files changed, 22 insertions(+), 21 deletions(-) diff --git a/sci-biology/angsd/angsd-9999.ebuild b/sci-biology/angsd/angsd-9999.ebuild index e4c2be6..0de57d4 100644 --- a/sci-biology/angsd/angsd-9999.ebuild +++ b/sci-biology/angsd/angsd-9999.ebuild @@ -1,40 +1,39 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 -inherit git-2 - -[ "$PV" == "9999" ] && inherit git-2 +inherit git-r3 DESCRIPTION="Population genetics analysis package" HOMEPAGE="http://www.popgen.dk/angsd"; -if [ "$PV" == "9999" ]; then - EGIT_REPO_URI="https://github.com/ANGSD/angsd.git"; - KEYWORDS="" -else - EGIT_REPO_URI="https://github.com/ANGSD/angsd.git"; - EGIT_BRANCH="0.700" - KEYWORDS="" -fi +EGIT_REPO_URI="https://github.com/ANGSD/angsd.git"; LICENSE="GPL-2" SLOT="0" +KEYWORDS="" IUSE="" -DEPEND="dev-lang/R +DEPEND=" + dev-lang/R sci-libs/htslib" RDEPEND="${DEPEND}" # https://github.com/ANGSD/angsd/issues/9 src_prepare(){ - sed -e 's@FLAGS=-O3@FLAGS=@' \ + sed \ + -e 's@FLAGS=-O3@FLAGS=@' \ + -e 's@HTSLIB = .*@HTSLIB = -lhts@' \ + -e 's@all: htshook angsd misc@all: angsd misc@' \ + -i Makefile || die + sed \ -e 's@HTSLIB = .*@HTSLIB = -lhts@' \ - -e 's@all: htshook angsd misc@all: angsd misc@' -i Makefile || die - sed -e 's@HTSLIB = .*@HTSLIB = -lhts@' \ - -e 's@HTSDIR = .*@HTSDIR = /usr/include@' -i misc/Makefile || die - sed -e 's@include "../htslib/bgzf.h@include "bgzf.h@' -i misc/thetaStat.cpp || die + -e 's@HTSDIR = .*@HTSDIR = /usr/include@' \ + -i misc/Makefile || die + sed \ + -e 's@include "../htslib/bgzf.h@include "bgzf.h@' \ + -i misc/thetaStat.cpp || die } src_compile(){ @@ -45,5 +44,7 @@ src_install(){ dobin angsd dodoc README.md cd misc || die - dobin supersim thetaStat realSFS emOptim2 msToGlf smartCount printIcounts splitgl contamination NGSadmix + dobin \ + supersim thetaStat realSFS emOptim2 msToGlf smartCount \ + printIcounts splitgl contamination NGSadmix } diff --git a/sci-biology/angsd/metadata.xml b/sci-biology/angsd/metadata.xml index 1699e58..f68a1b6 100644 --- a/sci-biology/angsd/metadata.xml +++ b/sci-biology/angsd/metadata.xml @@ -5,7 +5,7 @@ <email>[email protected]</email> <name>Martin Mokrejs</name> </maintainer> -<maintainer type="project"> + <maintainer type="project"> <email>[email protected]</email> <name>Gentoo Biology Project</name> </maintainer>
