commit: 3f78358286d681fd4f41ce8a366a45988d70f8b1 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Feb 10 15:23:58 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Feb 10 15:23:58 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3f783582
sci-biology/ANGLE-bin: new package Package-Manager: portage-2.2.26 sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild | 33 +++++++++++++++++++++++++ sci-biology/ANGLE-bin/metadata.xml | 12 +++++++++ 2 files changed, 45 insertions(+) diff --git a/sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild b/sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild new file mode 100644 index 0000000..44bc582 --- /dev/null +++ b/sci-biology/ANGLE-bin/ANGLE-bin-20080813.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="CDS prediction overcoming sequencing errors in protein coding regions in unfinished cDNA" +HOMEPAGE="http://bioinformatics.cenargen.embrapa.br/portrait/download"; +SRC_URI="http://bioinformatics.cenargen.embrapa.br/portrait/download/angle.tar.gz"; + +RESTRICT="fetch" +# According to Roberto T Arrial (author of portrait) for the purpose of his +# portrait project the binaries were provided under a BSD license. +# The output from Angle is modified for use with portrait and differs from +# current versions at http://cbrc3.cbrc.jp/~shimizu/index.php +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/angle + +src_install(){ + dobin *.pl ANGLE-linux64 ANGLE-linux32 ANGLE-linux32DP ANGLE-linux64DP + dodoc README.txt + insinto /usr/share/"${PN}" + doins test.html sample.txt sample2.txt "test" seq2.noOrf + doins -r param-human + doins -r param-plant +} diff --git a/sci-biology/ANGLE-bin/metadata.xml b/sci-biology/ANGLE-bin/metadata.xml new file mode 100644 index 0000000..1699e58 --- /dev/null +++ b/sci-biology/ANGLE-bin/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +<maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
