commit: 7debc3735baec3b152ad93cf7b436ed64002705f Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Mon Feb 8 21:31:10 2016 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Mon Feb 8 21:31:27 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7debc373
sci-biology/mira: Add missing <sys-devel/flex-2.6.0 dependency Gentoo-Bug: 574172 * Fix GCC5 explicit conversion of 'nullptr' to 'bool' * Fix overlong DESCRIPTION Package-Manager: portage-2.2.27 sci-biology/mira/files/mira-4.0.2-cout.patch | 11 +++++++++++ sci-biology/mira/mira-4.0.2.ebuild | 5 +++-- 2 files changed, 14 insertions(+), 2 deletions(-) diff --git a/sci-biology/mira/files/mira-4.0.2-cout.patch b/sci-biology/mira/files/mira-4.0.2-cout.patch index 14feb02..78e7168 100644 --- a/sci-biology/mira/files/mira-4.0.2-cout.patch +++ b/sci-biology/mira/files/mira-4.0.2-cout.patch @@ -14,3 +14,14 @@ index 47e5ee8..060b6f3 100644 // make the "tcmalloc: large alloc" messages from TCMallom disappear // by setting the reporting environment variable to a very large value // see: http://groups.google.com/group/google-perftools/browse_thread/thread/24a003fc35f3d470?pli=1 +--- a/src/mira/parameters.C ++++ b/src/mira/parameters.C +@@ -2222,7 +2222,7 @@ + MIRANOTIFY(Notify::FATAL, "File not found: " << pfile); + } + +- parse(fin, Pv, nullptr); ++ parse(fin, Pv, false); + + fin.close(); + diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild index b89246b..9b04aac 100644 --- a/sci-biology/mira/mira-4.0.2.ebuild +++ b/sci-biology/mira/mira-4.0.2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -9,7 +9,7 @@ MY_PV="${PV/_}" # convert from mira-4.0_rc2 (Gentoo ebuild filename derived) to inherit autotools eutils multilib -DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" +DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina" HOMEPAGE="http://www.chevreux.org/projects_mira.html"; SRC_URI=" http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/"${PN}"-"${MY_PV}".tar.bz2 @@ -28,6 +28,7 @@ CDEPEND=" dev-libs/boost[threads] dev-util/google-perftools" DEPEND="${CDEPEND} + <sys-devel/flex-2.6.0 app-editors/vim-core dev-libs/expat" RDEPEND="${CDEPEND}"
