commit: 34dc9de16f4718583c6703705017a2365a137bf8
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 21 18:35:27 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jan 21 18:36:19 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=34dc9de1
sci-biology/iedera: Remove hardcoded {C,CXX,LD}FLAGS from configure.ac
Package-Manager: portage-2.2.27
.../iedera/files/iedera-1.05-fix-buildsystem.patch | 16 ++++++++++++++++
.../iedera/{iedera-1.05.ebuild => iedera-1.05-r1.ebuild} | 12 ++++++++----
2 files changed, 24 insertions(+), 4 deletions(-)
diff --git a/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
new file mode 100644
index 0000000..f232d7d
--- /dev/null
+++ b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
@@ -0,0 +1,16 @@
+iedera sets default flags that override user {C,CXX,LD}FLAGS
+
+--- iedera-1.05/configure.ac
++++ iedera-1.05/configure.ac
+@@ -4,11 +4,5 @@
+ AC_PROG_INSTALL
+ AC_PROG_CXX
+ AC_HEADER_STDC
+-CFLAGS="$CFLAGS $UNAME_DEFS -O3 -pipe -funroll-loops -Wall"
+-CXXFLAGS="$CFLAGS"
+-LDFLAGS="$LDFLAGS -lm"
+-AC_SUBST(CFLAGS)
+-AC_SUBST(CXXFLAGS)
+-AC_SUBST(LDFLAGS)
+ AC_CONFIG_FILES([Makefile])
+ AC_OUTPUT
diff --git a/sci-biology/iedera/iedera-1.05.ebuild
b/sci-biology/iedera/iedera-1.05-r1.ebuild
similarity index 73%
rename from sci-biology/iedera/iedera-1.05.ebuild
rename to sci-biology/iedera/iedera-1.05-r1.ebuild
index fb442a6..ec52dd3 100644
--- a/sci-biology/iedera/iedera-1.05.ebuild
+++ b/sci-biology/iedera/iedera-1.05-r1.ebuild
@@ -4,6 +4,8 @@
EAPI=6
+inherit autotools
+
DESCRIPTION="A subset seed design tool for DNA sequence alignment"
HOMEPAGE="http://bioinfo.lifl.fr/yass/iedera.php";
SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz";
@@ -13,10 +15,12 @@ SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
-DEPEND=""
-RDEPEND=""
+PATCHES=(
+ "${FILESDIR}/${P}-fix-buildsystem.patch"
+)
-src_install() {
+src_prepare() {
+ mv configure.{in,ac} || die
default
- dodoc AUTHORS README NEWS
+ eautoreconf
}
