commit: 94d90ab3b484a298828765dcccac7416741911d2 Author: Ted Tanberry <ted.tanberry <AT> gmail <DOT> com> AuthorDate: Thu Dec 3 21:59:00 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Thu Dec 3 21:59:00 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=94d90ab3
sci-biology/pysam: version bump to 0.8.4 Package-Manager: portage-2.2.26 sci-biology/pysam/ChangeLog | 5 +++++ sci-biology/pysam/pysam-0.8.4.ebuild | 27 +++++++++++++++++++++++++++ 2 files changed, 32 insertions(+) diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog index c4c9a54..492a5fc 100644 --- a/sci-biology/pysam/ChangeLog +++ b/sci-biology/pysam/ChangeLog @@ -2,6 +2,11 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ +*pysam-0.8.4 (03 Dec 2015) + + 03 Dec 2015; Ted Tanberry <[email protected]> +pysam-0.8.4.ebuild: + sci-biology/pysam: version bump to 0.8.4 + 04 May 2015; Marius Brehler <[email protected]> pysam-0.7.5.ebuild: Fix deps diff --git a/sci-biology/pysam/pysam-0.8.4.ebuild b/sci-biology/pysam/pysam-0.8.4.ebuild new file mode 100644 index 0000000..2b4d3d9 --- /dev/null +++ b/sci-biology/pysam/pysam-0.8.4.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="5" + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" +HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"; +SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-python/setuptools[${PYTHON_USEDEP}] + >=sci-biology/samtools-1.2[${PYTHON_USEDEP}] + >=sci-libs/htslib-1.2.1" + +python_compile() { + python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing" + distutils-r1_python_compile +}
