commit: a6e8082dd9b651ba5114e1dbb08859e06d52f320
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Nov 22 21:18:31 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Nov 22 21:18:31 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a6e8082d
sci-biology/ncbi-blast+-2.2.31: version bump, seems that some parts of the
ncbi-blast+-2.2.30__fix_lib_deps.patch could/should be re-used
Package-Manager: portage-2.2.18
sci-biology/ncbi-blast+/ChangeLog | 8 ++++++++
...{fix_lib_deps.patch => ncbi-blast+-2.2.30__fix_lib_deps.patch} | 0
sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild | 2 +-
.../{ncbi-blast+-2.2.30.ebuild => ncbi-blast+-2.2.31.ebuild} | 5 ++++-
4 files changed, 13 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ncbi-blast+/ChangeLog
b/sci-biology/ncbi-blast+/ChangeLog
index 4570694..4e01710 100644
--- a/sci-biology/ncbi-blast+/ChangeLog
+++ b/sci-biology/ncbi-blast+/ChangeLog
@@ -2,6 +2,14 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+*ncbi-blast+-2.2.31 (22 Nov 2015)
+
+ 22 Nov 2015; Martin Mokrejs <[email protected]>
+ +files/ncbi-blast+-2.2.30__fix_lib_deps.patch, +ncbi-blast+-2.2.31.ebuild,
+ -files/fix_lib_deps.patch, ncbi-blast+-2.2.30.ebuild:
+ sci-biology/ncbi-blast+-2.2.31: version bump, seems that some parts of the
+ ncbi-blast+-2.2.30__fix_lib_deps.patch could/should be re-used
+
17 Jul 2015; Andrew Savchenko <[email protected]> metadata.xml:
Add sqlite3 flag description.
diff --git a/sci-biology/ncbi-blast+/files/fix_lib_deps.patch
b/sci-biology/ncbi-blast+/files/ncbi-blast+-2.2.30__fix_lib_deps.patch
similarity index 100%
rename from sci-biology/ncbi-blast+/files/fix_lib_deps.patch
rename to sci-biology/ncbi-blast+/files/ncbi-blast+-2.2.30__fix_lib_deps.patch
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
index 31152c5..3008025 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
@@ -125,7 +125,7 @@ src_prepare() {
## epatch ${PATCHES[@]}
# use a Debian patch from
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi-blast%2B/trunk/debian/patches/fix_lib_deps?revision=18535&view=markup
- epatch "${FILESDIR}"/fix_lib_deps.patch
+ epatch "${FILESDIR}"/"${P}"__fix_lib_deps.patch
# make sure this one is the last one and contains the actual patches
applied unless we can have autoconf-2.59 or 2.60
# https://bugs.gentoo.org/show_bug.cgi?id=514706
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
similarity index 98%
copy from sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
copy to sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
index 31152c5..9b3c9b2 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
@@ -125,7 +125,10 @@ src_prepare() {
## epatch ${PATCHES[@]}
# use a Debian patch from
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ncbi-blast%2B/trunk/debian/patches/fix_lib_deps?revision=18535&view=markup
- epatch "${FILESDIR}"/fix_lib_deps.patch
+ # the patches for 2.2.30+ do not apply to 2.2.31, mostly DLL_LIB is
gone but somewhere
+ # it is still present, plus in a few places was something else patched
+ # staying without any patches for now and lets see is it works on Gentoo
+ # epatch "${FILESDIR}"/fix_lib_deps.patch
# make sure this one is the last one and contains the actual patches
applied unless we can have autoconf-2.59 or 2.60
# https://bugs.gentoo.org/show_bug.cgi?id=514706
