commit: cb5cc14f669bad5286c22ff35ce42e3c3ce05ddc
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Nov 16 06:44:59 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Nov 16 06:44:59 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cb5cc14f
Merge branch 'master' of git+ssh://git.gentoo.org/proj/sci
* 'master' of git+ssh://git.gentoo.org/proj/sci:
sci-chemistry/votca-csg: update live ebuild
sci-biology/codonw: add original Thesis of John Peden describing codonw
package in more detail
sci-biology/BBmap: version bump; apply also the UnicodeToAscii.patch
sci-biology/Rcorrector: add einfo() message that default kmer size 23 is
suboptimal
sci-biology/SEECER: add einfo() message that default kmer size 17 is
suboptimal
sci-biology/Rcorrector: respect CXXFLAGS
sci-biology/Rcorrector: new package
sci-biology/jellyfish: fix filename generated by pkgconfig
sci-biology/SEECER: patch crappy shellscripts to at leats die on error;
require jellyfish-1.1.11
sci-biology/SEECER: remove hardcoded paths
sci-biology/BBmap-34.56: restoring previous working version
sci-biology/BBmap-35.66: this version needs more cleanup, upstream will make
a new release, dropping KEYWORD
Update local USE description
sci-libs/armadillo: Version bump; remove old
.../{BBmap-34.56.ebuild => BBmap-34.97.ebuild} | 1 +
.../{BBmap-34.56.ebuild => BBmap-35.66.ebuild} | 3 +-
sci-biology/BBmap/ChangeLog | 6 +
sci-biology/BBmap/Manifest | 3 +-
sci-biology/BBmap/files/UnicodeToAscii.patch | 17 +++
sci-biology/Rcorrector/ChangeLog | 18 +++
sci-biology/Rcorrector/Rcorrector-9999.ebuild | 36 ++++++
.../jhdf5 => sci-biology/Rcorrector}/metadata.xml | 0
sci-biology/SEECER/ChangeLog | 17 +++
...ECER-0.1.3-r1.ebuild => SEECER-0.1.3-r2.ebuild} | 19 +++-
.../SEECER/files/remove-hardcoded-paths.patch | 84 ++++++++++++++
sci-biology/codonw/ChangeLog | 5 +
sci-biology/codonw/Manifest | 1 +
sci-biology/codonw/codonw-1.4.4-r2.ebuild | 5 +-
sci-biology/jellyfish/ChangeLog | 4 +
sci-biology/jellyfish/jellyfish-1.1.11.ebuild | 3 +-
sci-chemistry/votca-csg/ChangeLog | 3 +
sci-chemistry/votca-csg/votca-csg-9999.ebuild | 2 +-
sci-libs/armadillo/ChangeLog | 7 ++
sci-libs/armadillo/Manifest | 3 +-
sci-libs/armadillo/armadillo-5.500.2.ebuild | 121 ---------------------
...llo-5.400.2.ebuild => armadillo-6.200.3.ebuild} | 2 +-
22 files changed, 226 insertions(+), 134 deletions(-)
