commit: 277988bc6789886e695d7a1ba4d2eeb3f352e0e7
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Nov 13 10:00:04 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Nov 13 10:00:04 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=277988bc
sci-biology/BBmap-35.66: this version needs more cleanup, upstream will make a
new release, dropping KEYWORD
Package-Manager: portage-2.2.18
.../BBmap/{BBmap-34.56.ebuild => BBmap-35.66.ebuild} | 3 ++-
sci-biology/BBmap/files/UnicodeToAscii.patch | 17 +++++++++++++++++
2 files changed, 19 insertions(+), 1 deletion(-)
diff --git a/sci-biology/BBmap/BBmap-34.56.ebuild
b/sci-biology/BBmap/BBmap-35.66.ebuild
similarity index 94%
rename from sci-biology/BBmap/BBmap-34.56.ebuild
rename to sci-biology/BBmap/BBmap-35.66.ebuild
index a898eff..982c762 100644
--- a/sci-biology/BBmap/BBmap-34.56.ebuild
+++ b/sci-biology/BBmap/BBmap-35.66.ebuild
@@ -12,7 +12,7 @@
SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_"${PV}".tar.gz";
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS=""
IUSE=""
DEPEND="
@@ -30,6 +30,7 @@ src_prepare(){
# see bug #542700
sed -e
's#/usr/common/usg/hpc/openmpi/gnu4.6/sge/1.8.1/ib_2.1-1.0.0/lib/mpi.jar#/usr/share/openmpi/lib/mpi.jar#'
-i build.xml
sed -e 's#compiler="${jcompiler}" ##' -i build.xml
+ epatch "${FILESDIR}"/UnicodeToAscii.patch
}
src_compile(){
diff --git a/sci-biology/BBmap/files/UnicodeToAscii.patch
b/sci-biology/BBmap/files/UnicodeToAscii.patch
new file mode 100644
index 0000000..36e5a36
--- /dev/null
+++ b/sci-biology/BBmap/files/UnicodeToAscii.patch
@@ -0,0 +1,17 @@
+--- bbmap/current/jgi/UnicodeToAscii.java.ori 2015-11-12 20:24:13.704471341
+0100
++++ bbmap/current/jgi/UnicodeToAscii.java 2015-11-12 20:27:12.564474322
+0100
+@@ -20,14 +20,6 @@
+ public class UnicodeToAscii {
+
+ public static void main(String[] args){
+-// try {
+-// System.err.println("A���C");
+-// System.err.println(new String("A���C".getBytes("UTF8"),
"UTF8"));
+-// } catch (Exception e) {
+-// // TODO Auto-generated catch block
+-// e.printStackTrace();
+-// }
+-// assert(false);
+
+ Timer t=new Timer();
+ t.start();
