commit: b1a4cd1ee04901d7a7b590ef1abcd4475782f8c2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Fri Oct 23 11:00:54 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Fri Oct 23 11:00:54 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b1a4cd1e
sci-chemistry/talosn: Version Bump Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> .../talosn/talosn-4.12.2015.147.15.40.ebuild | 68 ++++++++++++++++++++++ 1 file changed, 68 insertions(+) diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild new file mode 100644 index 0000000..f28e0fb --- /dev/null +++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit java-pkg-opt-2 + +DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts" +HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"; +SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" + +SLOT="0" +LICENSE="all-rights-reserved" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="examples" + +DEPEND=">=virtual/jre-1.5:*" +RDEPEND="${DEPEND} + app-shells/tcsh + sci-biology/ncbi-tools" + +S="${WORKDIR}" + +QA_PREBUILT="/opt/.*" + +src_prepare() { + local s64 + use amd64 || s64="_x64" + rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die + + sed \ + -e '/setenv TALOSN_DIR/d' \ + -e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \ + -e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \ + -i talosn_ss || die +} + +src_install() { + local TALOSN="/opt/${PN}" + exeinto ${TALOSN}/bin + doexe bin/* + + exeinto ${TALOSN}/com + doexe com/* + + exeinto /opt/bin + doexe talosn{,_ss} + + insinto ${TALOSN} + doins -r tab + + java-pkg_jarinto ${TALOSN} + java-pkg_dojar rama.jar + + java-pkg_dolauncher jrama --jar rama.jar -into /opt/ + + if use examples; then + insinto /usr/share/${PN} + doins -r demo + fi + + cat >> "${T}"/40talosn <<- EOF + TALOSN_DIR="${EPREFIX}/${TALOSN}" + #BLASTDB= + EOF + doenvd "${T}"/40talosn +}
