commit: 722cfa776f5ebeb3305f01ef794fcb7ce14b9293
Author: layman <layman <AT> localhost>
AuthorDate: Sat Sep 12 12:44:25 2015 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sat Sep 12 12:44:25 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=722cfa77
Merge branch 'master' into symengine
.travis.yml | 16 +-
dev-libs/boost-compute/ChangeLog | 17 +
dev-libs/boost-compute/boost-compute-0.4-r1.ebuild | 28 +-
dev-libs/boost-compute/boost-compute-9999.ebuild | 17 +-
dev-python/ipykernel/ChangeLog | 13 +
dev-python/ipykernel/Manifest | 1 +
dev-python/ipykernel/ipykernel-4.0.3.ebuild | 1 +
dev-python/ipykernel/ipykernel-9999.ebuild | 39 +
.../{jupyter-nbgrader => ipykernel}/metadata.xml | 2 +-
dev-python/ipyparallel/ChangeLog | 28 +
dev-python/ipyparallel/Manifest | 2 +
dev-python/ipyparallel/ipyparallel-4.0.0-r1.ebuild | 1 +
dev-python/ipyparallel/ipyparallel-4.0.2.ebuild | 62 +
dev-python/ipyparallel/ipyparallel-9999.ebuild | 62 +
.../{jupyter-nbgrader => ipyparallel}/metadata.xml | 3 +-
dev-python/ipython/ChangeLog | 37 +
dev-python/ipython/Manifest | 1 +
.../ipython/files/2.1.0-substitute-files.patch | 27 +
dev-python/ipython/ipython-4.0.0-r1.ebuild | 132 +
dev-python/ipython/metadata.xml | 51 +
dev-python/ipython_genutils/ChangeLog | 14 +
dev-python/ipython_genutils/Manifest | 1 +
.../ipython_genutils/ipython_genutils-0.1.0.ebuild | 1 +
.../ipython_genutils/ipython_genutils-9999.ebuild | 34 +
dev-python/ipython_genutils/metadata.xml | 14 +
dev-python/ipywidgets/ChangeLog | 16 +
dev-python/ipywidgets/Manifest | 1 +
dev-python/ipywidgets/ipywidgets-4.0.2.ebuild | 1 +
dev-python/ipywidgets/ipywidgets-9999.ebuild | 40 +
.../ipywidgets}/metadata.xml | 12 +-
dev-python/jupyter-nbgrader/ChangeLog | 9 -
.../jupyter-nbgrader/jupyter-nbgrader-9999.ebuild | 32 -
dev-python/jupyter-nbviewer/ChangeLog | 9 -
dev-python/jupyter/ChangeLog | 9 +
dev-python/jupyter/Manifest | 1 +
dev-python/jupyter/jupyter-1.0.0.ebuild | 45 +
dev-python/jupyter/metadata.xml | 12 +
dev-python/jupyter_client/ChangeLog | 21 +
dev-python/jupyter_client/Manifest | 1 +
.../jupyter_client/jupyter_client-4.0.0.ebuild | 1 +
.../jupyter_client/jupyter_client-9999.ebuild | 41 +
dev-python/jupyter_client/metadata.xml | 11 +
dev-python/jupyter_console/ChangeLog | 36 +
dev-python/jupyter_console/Manifest | 1 +
.../jupyter_console/jupyter_console-4.0.2.ebuild | 1 +
.../jupyter_console/jupyter_console-9999.ebuild | 60 +
.../metadata.xml | 3 +-
dev-python/jupyter_core/ChangeLog | 29 +
dev-python/jupyter_core/Manifest | 2 +
.../files/jupyter_core-4.0.4-add-test-files.patch | 50 +
.../jupyter_core/jupyter_core-4.0.4-r1.ebuild | 45 +
dev-python/jupyter_core/jupyter_core-9999.ebuild | 59 +
.../metadata.xml | 4 +-
dev-python/line_profiler/ChangeLog | 10 +
dev-python/line_profiler/Manifest | 1 +
dev-python/line_profiler/line_profiler-1.0.ebuild | 1 +
dev-python/line_profiler/line_profiler-9999.ebuild | 35 +
dev-python/line_profiler/metadata.xml | 18 +
dev-python/nbconvert/ChangeLog | 40 +
dev-python/nbconvert/Manifest | 1 +
.../files/nbconvert-4.0.0-docs-Makefile.patch | 16 +
.../nbconvert-4.0.0-pandoc-highlighting.patch | 37 +
.../{jupyter-nbgrader => nbconvert}/metadata.xml | 3 +-
dev-python/nbconvert/nbconvert-4.0.0-r1.ebuild | 1 +
dev-python/nbconvert/nbconvert-9999.ebuild | 81 +
dev-python/nbformat/ChangeLog | 19 +
dev-python/nbformat/Manifest | 1 +
dev-python/nbformat/metadata.xml | 11 +
dev-python/nbformat/nbformat-4.0.0.ebuild | 1 +
dev-python/nbformat/nbformat-9999.ebuild | 65 +
dev-python/nbviewer/ChangeLog | 9 +
.../{jupyter-nbviewer => nbviewer}/metadata.xml | 0
.../nbviewer-9999.ebuild} | 6 +-
dev-python/notebook/ChangeLog | 60 +
dev-python/notebook/Manifest | 1 +
.../{jupyter-nbgrader => notebook}/metadata.xml | 3 +-
dev-python/notebook/notebook-4.0.4-r2.ebuild | 1 +
dev-python/notebook/notebook-9999.ebuild | 91 +
dev-python/qtconsole/ChangeLog | 22 +
dev-python/qtconsole/Manifest | 1 +
.../{jupyter-nbgrader => qtconsole}/metadata.xml | 3 +-
dev-python/qtconsole/qtconsole-4.0.1-r1.ebuild | 1 +
dev-python/qtconsole/qtconsole-9999.ebuild | 67 +
dev-python/testpath/ChangeLog | 14 +
dev-python/testpath/Manifest | 1 +
.../testpath/files/testpath-0.2-setup.py.patch | 28 +
dev-python/testpath/metadata.xml | 11 +
dev-python/testpath/testpath-0.2.ebuild | 1 +
dev-python/testpath/testpath-9999.ebuild | 60 +
dev-python/traitlets/ChangeLog | 16 +
dev-python/traitlets/Manifest | 1 +
dev-python/traitlets/metadata.xml | 13 +
dev-python/traitlets/traitlets-4.0.0.ebuild | 1 +
dev-python/traitlets/traitlets-9999.ebuild | 59 +
dev-util/nvidia-cuda-gdk/ChangeLog | 6 +
dev-util/nvidia-cuda-gdk/Manifest | 1 +
.../nvidia-cuda-gdk/nvidia-cuda-gdk-352.39.ebuild | 187 +
dev-util/nvidia-cuda-sdk/ChangeLog | 9 -
dev-util/nvidia-cuda-sdk/Manifest | 1 -
.../nvidia-cuda-sdk/nvidia-cuda-sdk-7.5.7.ebuild | 151 -
dev-util/nvidia-cuda-toolkit/ChangeLog | 9 -
dev-util/nvidia-cuda-toolkit/Manifest | 1 -
dev-util/nvidia-cuda-toolkit/files/cuda-config.in | 28 -
dev-util/nvidia-cuda-toolkit/metadata.xml | 14 -
.../nvidia-cuda-toolkit-7.5.7.ebuild | 152 -
docs/proj/blas-lapack.xml | 2 +-
docs/proj/linalg.xml | 2 +-
media-gfx/librecad/ChangeLog | 12 +
media-gfx/librecad/Manifest | 1 +
media-gfx/librecad/librecad-2.0.8.ebuild | 67 +
media-gfx/librecad/librecad-9999.ebuild | 44 +-
media-gfx/librecad/metadata.xml | 17 +-
patches/ccp4/6.1.2/fix-baubles.patch | 22 -
patches/ccp4/6.1.2/rename-rapper.patch | 12 -
patches/ccp4/6.1.2/rename-superpose.patch | 12 -
patches/ccp4/6.1.2/rename-truncate.patch | 22 -
patches/jupyter_core-4.0.4-tests-dotipython.patch | 4743 ++++++++++++++++++++
profiles/use.local.desc | 386 +-
sci-biology/amos-short/ChangeLog | 4 +
sci-biology/amos-short/amos-short-0.9.3.ebuild | 4 +-
sci-biology/beagle/ChangeLog | 6 +
sci-biology/beagle/beagle-4.0.ebuild | 5 +-
sci-biology/salmon/salmon-0.4.2.ebuild | 2 +-
sci-biology/tophat/metadata.xml | 3 -
sci-biology/tophat/tophat-2.0.12.ebuild | 2 -
sci-biology/tophat/tophat-2.0.13.ebuild | 2 -
sci-biology/tophat/tophat-2.0.14.ebuild | 2 -
sci-biology/weblogo/ChangeLog | 9 +
sci-biology/weblogo/Manifest | 1 +
.../jhdf5 => sci-biology/weblogo}/metadata.xml | 0
sci-biology/weblogo/weblogo-2.8.2.ebuild | 35 +
sci-chemistry/NMRdyn/Manifest | 1 +
sci-chemistry/NMRdyn/NMRdyn-3.2.5.ebuild | 79 +
.../NMRdyn/files/NMRdyn-3.2.5-redefinition.patch | 19 +
.../tophat => sci-chemistry/NMRdyn}/metadata.xml | 8 +-
.../nmrpipe/nmrpipe-8.1.2013.218.23.09-r1.ebuild | 5 +-
sci-chemistry/phenix-bin/Manifest | 1 +
...1.9.1692.ebuild => phenix-bin-1.10.2155.ebuild} | 26 +-
.../phenix-bin/phenix-bin-1.9.1692.ebuild | 5 +-
.../pymol-plugins-psico-9999.ebuild | 7 +-
sci-chemistry/pymol/pymol-9999.ebuild | 2 +-
sci-chemistry/xplor-nih/xplor-nih-2.38.ebuild | 4 +
sci-libs/armadillo/ChangeLog | 16 +
sci-libs/armadillo/Manifest | 4 +-
sci-libs/armadillo/armadillo-5.100.2.ebuild | 112 -
...-5.200.2-r1.ebuild => armadillo-5.400.2.ebuild} | 0
...-5.200.2-r1.ebuild => armadillo-5.500.2.ebuild} | 0
sci-libs/arrayfire/ChangeLog | 21 +
sci-libs/arrayfire/Manifest | 2 +
...ayfire-0.9999.ebuild => arrayfire-3.0.2.ebuild} | 35 +-
...rrayfire-9999.ebuild => arrayfire-3.1.0.ebuild} | 32 +-
sci-libs/arrayfire/arrayfire-9999.ebuild | 13 +-
sci-libs/arrayfire/files/FindBoostCompute.cmake | 18 -
...re-9999-Try-PkgConf-first-to-find-LAPACKE.patch | 182 +
sci-libs/clblas/ChangeLog | 13 +
sci-libs/clblas/Manifest | 1 +
sci-libs/clblas/clblas-2.4-r1.ebuild | 6 +-
.../{clblas-2.4-r1.ebuild => clblas-2.6.ebuild} | 6 -
sci-libs/clblas/clblas-9999.ebuild | 6 -
...s.patch => clblas-2.4-samples_CMakeLists.patch} | 0
...ch => clblas-2.4-scripts_perf_CMakeLists.patch} | 0
sci-libs/clfft/ChangeLog | 27 +
sci-libs/clfft/Manifest | 1 +
sci-libs/clfft/clfft-0.9999.ebuild | 2 -
sci-libs/clfft/clfft-2.4-r1.ebuild | 6 +-
.../{clfft-2.4-r1.ebuild => clfft-2.6.1.ebuild} | 13 +-
sci-libs/clfft/clfft-9999.ebuild | 10 +-
...sts.patch => clfft-2.4-client_CMakeLists.patch} | 0
...tch => clfft-2.4-scripts_perf_CMakeLists.patch} | 0
...l-cmake-configuration-to-lib-cmake-clFFT.patch} | 0
...-Install-examples-to-share-clFFT-examples.patch | 15 +
sci-libs/clfft/metadata.xml | 5 +
sci-libs/dealii/ChangeLog | 3 +
sci-libs/dealii/dealii-9999.ebuild | 5 +-
sci-libs/nibabel/Manifest | 1 +
sci-libs/nibabel/nibabel-2.0.1.ebuild | 42 +
sci-libs/pydicom/ChangeLog | 3 +
sci-libs/pydicom/Manifest | 1 +
sci-libs/pydicom/pydicom-0.9.9.ebuild | 18 +
sci-libs/trilinos/ChangeLog | 9 +
sci-libs/trilinos/Manifest | 1 +
.../files/trilinos-12.2.1-compilation_fixes.patch | 43 +
sci-libs/trilinos/trilinos-12.2.1.ebuild | 208 +
sci-mathematics/petsc/ChangeLog | 4 +
sci-mathematics/petsc/petsc-3.5.3.ebuild | 2 +-
sci-mathematics/petsc/petsc-3.6.0.ebuild | 2 +-
sci-mathematics/scilab/ChangeLog | 6 +
...{scilab-5.5.2.ebuild => scilab-5.5.2-r1.ebuild} | 3 +-
sci-physics/herwig++/ChangeLog | 7 +-
sci-physics/herwig++/Manifest | 1 -
...++-2.7.0-r1.ebuild => herwig++-2.7.0-r2.ebuild} | 6 +-
sci-physics/herwig++/herwig++-2.7.1.ebuild | 57 -
sci-physics/herwig++/metadata.xml | 2 +-
sci-physics/looptools/ChangeLog | 4 +
sci-physics/looptools/Manifest | 2 -
sci-physics/looptools/looptools-2.12.ebuild | 39 -
sci-physics/looptools/looptools-2.8.ebuild | 39 -
sci-physics/rivet/ChangeLog | 3 +
sci-physics/rivet/Manifest | 1 -
sci-physics/rivet/rivet-2.3.0.ebuild | 60 -
sci-physics/thepeg/ChangeLog | 6 +-
sci-physics/thepeg/Manifest | 1 -
sci-physics/thepeg/metadata.xml | 2 -
sci-physics/thepeg/thepeg-1.9.2.ebuild | 97 -
sci-physics/yoda/ChangeLog | 3 +
sci-physics/yoda/Manifest | 1 -
sci-physics/yoda/metadata.xml | 1 -
sci-physics/yoda/yoda-1.4.0.ebuild | 51 -
208 files changed, 8150 insertions(+), 1230 deletions(-)
