commit: 34064629ffa589001b3c102ba9c4d6d366f85c2b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 19:43:41 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 19:43:41 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=34064629
sci-biology/autoeditor: Bump to EAPI 5
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/autoeditor/autoeditor-1.20.ebuild | 10 +++++-----
sci-biology/autoeditor/metadata.xml | 2 +-
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/sci-biology/autoeditor/autoeditor-1.20.ebuild
b/sci-biology/autoeditor/autoeditor-1.20.ebuild
index 59868e6..1eda9ca 100644
--- a/sci-biology/autoeditor/autoeditor-1.20.ebuild
+++ b/sci-biology/autoeditor/autoeditor-1.20.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=3
+EAPI=5
inherit eutils
@@ -15,7 +15,7 @@ SRC_URI="
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
+IUSE="test"
DEPEND="
>=sci-libs/io_lib-1.8.11
@@ -26,7 +26,7 @@ RDEPEND="${DEPEND}"
S="${WORKDIR}"/autoEditor-1.20
src_prepare(){
- epatch "${FILESDIR}"/Makefile.patch || die
+ epatch "${FILESDIR}"/Makefile.patch
rm -rf TigrFoundation-2.0 || die "Failed to drop TigrFoundation-2.0/"
}
@@ -36,6 +36,6 @@ src_prepare(){
# * getConsQV.c:1051: warning: implicit declaration of function 'memset'
src_test(){
- make sample > sample.out || die
+ emake sample > sample.out
diff -u -w "${FILESDIR}"/sample_expected.out sample.out || die
}
diff --git a/sci-biology/autoeditor/metadata.xml
b/sci-biology/autoeditor/metadata.xml
index 5990f62..b0b877b 100644
--- a/sci-biology/autoeditor/metadata.xml
+++ b/sci-biology/autoeditor/metadata.xml
@@ -6,7 +6,7 @@
<email>[email protected]</email>
<name>Martin Mokrejs</name>
</maintainer>
- <longdescription>AutoEditor is a program that can automatically correct
discrepancies in a
+ <longdescription>AutoEditor is a program that can automatically correct
discrepancies in a
multiple alignment by reanalyzing the chromatograms of the discrepant
bases.
The input to AutoEditor is the multiple alignment in contig form, the
sequence
and quality values in FASTA format, and the base call positions in
