commit: e8bad311842f4dbbd58670dc3dd9a778258fae25 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Mon Sep 7 06:49:23 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Mon Sep 7 06:49:23 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e8bad311
sci-biology/tophat: Drop unnecessary deps On behalf of Martin Mokrejs Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/tophat/metadata.xml | 3 --- sci-biology/tophat/tophat-2.0.12.ebuild | 2 -- sci-biology/tophat/tophat-2.0.13.ebuild | 2 -- sci-biology/tophat/tophat-2.0.14.ebuild | 2 -- 4 files changed, 9 deletions(-) diff --git a/sci-biology/tophat/metadata.xml b/sci-biology/tophat/metadata.xml index 36cf4a1..f17a827 100644 --- a/sci-biology/tophat/metadata.xml +++ b/sci-biology/tophat/metadata.xml @@ -2,7 +2,4 @@ <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> <herd>sci-biology</herd> - <use> - <flag name="bam">Compile support for the BAM format</flag> - </use> </pkgmetadata> diff --git a/sci-biology/tophat/tophat-2.0.12.ebuild b/sci-biology/tophat/tophat-2.0.12.ebuild index 119418e..7c9cf07 100644 --- a/sci-biology/tophat/tophat-2.0.12.ebuild +++ b/sci-biology/tophat/tophat-2.0.12.ebuild @@ -29,8 +29,6 @@ DEPEND="dev-libs/boost" # samtools_0.1.18 sort # samtools_0.1.18 merge -f -h -u -Q --sam-header RDEPEND="${DEPEND} - >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}] - <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}] >=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )" # PATCHES=( "${FILESDIR}"/${P}-flags.patch ) diff --git a/sci-biology/tophat/tophat-2.0.13.ebuild b/sci-biology/tophat/tophat-2.0.13.ebuild index 88e26be..6625162 100644 --- a/sci-biology/tophat/tophat-2.0.13.ebuild +++ b/sci-biology/tophat/tophat-2.0.13.ebuild @@ -29,8 +29,6 @@ DEPEND="dev-libs/boost" # samtools_0.1.18 sort # samtools_0.1.18 merge -f -h -u -Q --sam-header RDEPEND="${DEPEND} - >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}] - <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}] >=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )" # PATCHES=( "${FILESDIR}"/${P}-flags.patch ) diff --git a/sci-biology/tophat/tophat-2.0.14.ebuild b/sci-biology/tophat/tophat-2.0.14.ebuild index f38855b..0b8f1e8 100644 --- a/sci-biology/tophat/tophat-2.0.14.ebuild +++ b/sci-biology/tophat/tophat-2.0.14.ebuild @@ -29,8 +29,6 @@ DEPEND="dev-libs/boost" # samtools_0.1.18 sort # samtools_0.1.18 merge -f -h -u -Q --sam-header RDEPEND="${DEPEND} - >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}] - <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}] >=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )" # see https://aur.archlinux.org/packages/tophat/ about linking issues
