commit: 33cea93a515d0fa559263ce382d76739bc4b4338 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jun 24 14:14:54 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jun 24 14:14:54 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=33cea93a
sci-biology/RSeQC: new package Package-Manager: portage-2.2.18 sci-biology/RSeQC/ChangeLog | 9 +++++++++ sci-biology/RSeQC/RSeQC-2.6.1.ebuild | 30 ++++++++++++++++++++++++++++++ sci-biology/RSeQC/metadata.xml | 9 +++++++++ 3 files changed, 48 insertions(+) diff --git a/sci-biology/RSeQC/ChangeLog b/sci-biology/RSeQC/ChangeLog new file mode 100644 index 0000000..854e7ec --- /dev/null +++ b/sci-biology/RSeQC/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/RSeQC +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*RSeQC-2.6.1 (24 Jun 2015) + + 24 Jun 2015; Martin Mokrejs <[email protected]> +RSeQC-2.6.1.ebuild, + +metadata.xml: + sci-biology/RSeQC: new package diff --git a/sci-biology/RSeQC/RSeQC-2.6.1.ebuild b/sci-biology/RSeQC/RSeQC-2.6.1.ebuild new file mode 100644 index 0000000..a6cdfed --- /dev/null +++ b/sci-biology/RSeQC/RSeQC-2.6.1.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Utilities for RNA-seq data quality control" +HOMEPAGE="http://rseqc.sourceforge.net"; +SRC_URI="http://sourceforge.net/projects/rseqc/files/RSeQC-2.6.1.tar.gz + http://sourceforge.net/projects/rseqc/files/other/fetchChromSizes"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="=sci-biology/pysam-0.7.5[${PYTHON_USEDEP}]" +RDEPEND="${DEPEND}" + +# pysam (v0.7.5) was built in RSeQC. The latest version of pysam may not be compatible with RSeQC. + +python_install(){ + distutils-r1_python_install + rm -r "${D}$(python_get_sitedir)"/pysam + dobin "${DISTDIR}"/fetchChromSizes +} diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/RSeQC/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
