jlec 15/06/16 08:34:28 Modified: ChangeLog Added: phrap-1.080812-r1.ebuild Removed: phrap-1.080812.ebuild Log: Bump to EAPI=5 and fix file collision, bug #422643; thanks Martin Mokrejs contacting upstream regarding this issue (Portage version: 2.2.20/cvs/Linux x86_64, signed Manifest commit with key E9402A79B03529A2!)
Revision Changes Path 1.4 sci-biology/phrap/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/phrap/ChangeLog?rev=1.4&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/phrap/ChangeLog?rev=1.4&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/phrap/ChangeLog?r1=1.3&r2=1.4 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/phrap/ChangeLog,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- ChangeLog 11 Mar 2013 16:36:19 -0000 1.3 +++ ChangeLog 16 Jun 2015 08:34:28 -0000 1.4 @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/phrap -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/ChangeLog,v 1.3 2013/03/11 16:36:19 jlec Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/ChangeLog,v 1.4 2015/06/16 08:34:28 jlec Exp $ + +*phrap-1.080812-r1 (16 Jun 2015) + + 16 Jun 2015; Justin Lecher <[email protected]> +phrap-1.080812-r1.ebuild, + -phrap-1.080812.ebuild: + Bump to EAPI=5 and fix file collision, bug #422643; thanks Martin Mokrejs + contacting upstream regarding this issue 11 Mar 2013; Justin Lecher <[email protected]> metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly @@ -15,4 +22,3 @@ +phrap-1.080812.ebuild: Import from Science overlay, bug 114094. Thanks to Brady Catherman and Martin Mokrejs. - 1.1 sci-biology/phrap/phrap-1.080812-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/phrap/phrap-1.080812-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/phrap/phrap-1.080812-r1.ebuild?rev=1.1&content-type=text/plain Index: phrap-1.080812-r1.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/phrap-1.080812-r1.ebuild,v 1.1 2015/06/16 08:34:28 jlec Exp $ EAPI=5 DESCRIPTION="Shotgun assembly and alignment utilities" HOMEPAGE="http://www.phrap.org/"; SRC_URI="phrap-${PV}-distrib.tar.gz" LICENSE="phrap" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" DEPEND="" RDEPEND=" dev-lang/perl dev-perl/perl-tk" S="${WORKDIR}" RESTRICT="fetch" pkg_nofetch() { einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file" einfo "\"distrib.tar.gz\", then rename it to \"phrap-${PV}-distrib.tar.gz\"" einfo "and put it in ${DISTDIR}" } src_prepare() { sed -i 's/CFLAGS=/#CFLAGS=/' makefile || die sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/env perl|' phrapview || die } src_install() { dobin cross_match loco phrap phrapview swat newbin cluster cluster_phrap for i in {general,phrap,swat}.doc ; do newdoc ${i} ${i}.txt done }
