commit: 6f9bc02910243a77c9c67f768877a511868b8706 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Mon Jun 15 07:21:37 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Mon Jun 15 07:21:37 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6f9bc029
sci-biology/manatee-igs: Fix dependency problems due to recent mask of perl-core packages Package-Manager: portage-2.2.20 sci-biology/manatee-igs/ChangeLog | 7 ++- sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild | 65 ++++++++++++----------- 2 files changed, 38 insertions(+), 34 deletions(-) diff --git a/sci-biology/manatee-igs/ChangeLog b/sci-biology/manatee-igs/ChangeLog index 2c85c80..8a60b08 100644 --- a/sci-biology/manatee-igs/ChangeLog +++ b/sci-biology/manatee-igs/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/manatee-igs -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 15 Jun 2015; Justin Lecher <[email protected]> manatee-igs-2.23.1.ebuild: + sci-biology/manatee-igs: Fix dependency problems due to recent mask of perl- + core packages + 29 Aug 2013; Martin Mokrejs <[email protected]> manatee-igs-2.23.1.ebuild: Both versions of manatee have same license, so rename unify the license @@ -24,4 +28,3 @@ 08 Jan 2012; Martin Mokrejs <[email protected]> +manatee-igs-2.23.1.ebuild, +metadata.xml: new package for prokaryotic genome annotation and editing - diff --git a/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild b/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild index b858a9d..fb0fa9f 100644 --- a/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild +++ b/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild @@ -1,13 +1,14 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=3 +EAPI=5 DESCRIPTION="IGS-modified version of the genome annotation tool using Chado database schema" HOMEPAGE="http://manatee.sourceforge.net/igs"; -SRC_URI="http://sourceforge.net/projects/manatee/files/igs_manatee/"${PV}"/manatee-"${PV}"_linux.tgz - http://manatee.sourceforge.net/igs/docs/README_Linux.txt"; +SRC_URI=" + http://sourceforge.net/projects/manatee/files/igs_manatee/"${PV}"/manatee-"${PV}"_linux.tgz + http://manatee.sourceforge.net/igs/docs/README_Linux.txt"; LICENSE="Artistic-Manatee" SLOT="0" @@ -15,35 +16,35 @@ KEYWORDS="~amd64 ~x86" IUSE="" DEPEND=" - >=dev-libs/expat-1.95.8 - >=media-libs/gd-2.0.34 - virtual/perl-CGI - dev-perl/Bio-DB-Das-Chado - dev-perl/DBI - dev-perl/DBD-mysql - dev-perl/XML-Parser - dev-perl/XML-Twig - dev-perl/XML-Simple - dev-perl/XML-Writer - dev-perl/HTML-Template - dev-perl/Tree-DAG_Node - virtual/perl-File-Spec - virtual/perl-Data-Dumper - dev-perl/GD - dev-perl/GDTextUtil - dev-perl/GDGraph - virtual/perl-Storable - dev-perl/Log-Log4perl - dev-perl/Log-Cabin - dev-perl/DateManip - dev-perl/IO-Tee - dev-perl/MLDBM - dev-perl/JSON - dev-perl/JSON-Any - sci-biology/bioperl" + >=dev-libs/expat-1.95.8 + >=media-libs/gd-2.0.34 + dev-perl/CGI + dev-perl/Bio-DB-Das-Chado + dev-perl/DBI + dev-perl/DBD-mysql + dev-perl/XML-Parser + dev-perl/XML-Twig + dev-perl/XML-Simple + dev-perl/XML-Writer + dev-perl/HTML-Template + dev-perl/Tree-DAG_Node + virtual/perl-File-Spec + virtual/perl-Data-Dumper + dev-perl/GD + dev-perl/GDTextUtil + dev-perl/GDGraph + virtual/perl-Storable + dev-perl/Log-Log4perl + dev-perl/Log-Cabin + dev-perl/DateManip + dev-perl/IO-Tee + dev-perl/MLDBM + dev-perl/JSON + dev-perl/JSON-Any + sci-biology/bioperl" RDEPEND="${DEPEND} - >=dev-db/mysql-5.0 - >=www-servers/apache-2.2" + >=dev-db/mysql-5.0 + >=www-servers/apache-2.2" S="${WORKDIR}"/manatee-"${PV}"_linux
