commit: 9e3dc1d39ddeb3791dd2f71f9eb6087bf0ba61c4 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Jun 9 10:22:32 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Jun 9 10:22:32 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9e3dc1d3
sci-biology/artemis-bin: ebuild cleanup Package-Manager: portage-2.2.18 sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild | 29 ++++++++++++++++------ 1 file changed, 21 insertions(+), 8 deletions(-) diff --git a/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild b/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild index d089c7f..3c04159 100644 --- a/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild +++ b/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild @@ -10,22 +10,35 @@ MY_V="16" DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool" HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"; -SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_compiled_v"${PV}".tar.gz +SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_compiled_v"${PV}".tar.gz + ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_v"${PV}".jar + ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/sartemis_v"${PV}".jar ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf"; - LICENSE="GPL-2" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64" IUSE="" -DEPEND="sci-biology/samtools - sci-biology/BamView" +S="${WORKDIR}"/artemis + +DEPEND=" + !sci-biology/artemis + sci-biology/samtools" RDEPEND="${DEPEND} >=virtual/jre-1.6" src_install(){ - dodoc artemis.pdf + cp -p "${DISTDIR}"/artemis_v"${PV}".jar artemis.jar || die + java-pkg_dojar artemis.jar + cp -p "${DISTDIR}"/sartemis_v"${PV}".jar sartemis.jar || die + java-pkg_dojar sartemis.jar + dodoc "${DISTDIR}"/artemis.pdf README } -# do not know what is the diffeerence between artemis_compiled_v16.0.6.tar.gz, artemis_v16.0.6.jar and sartemis_v16.0.6.jar -# ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/v16.0.6/ +# artemis_compiled_v16.0.11.tar.gz contains compiled binaries but also java *.class files +# artemis_v16.0.11.jar and sartemis_v16.0.11.jar +# ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/v16.0.11/ + +pkg_postinst(){ + einfo "For BAM file support please install sci-biology/BamView" +}
