commit: 161bbe69d571d57d061dafb8b99b9f20d66dd866 Author: Horea Christian <h.chr <AT> mail <DOT> ru> AuthorDate: Sat Jun 6 07:52:44 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Jun 6 07:52:44 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=161bbe69
Merge branch 'master' of https://github.com/gentoo-science/sci into sci app-vim/vim-gromacs/ChangeLog | 5 +- app-vim/vim-gromacs/metadata.xml | 3 + dev-libs/boost-compute/ChangeLog | 17 ++- ...pute-0.4.ebuild => boost-compute-0.4-r1.ebuild} | 0 dev-libs/boost-compute/boost-compute-9999.ebuild | 10 +- .../files/boost-compute-0.4-CMakeLists.patch | 14 +++ dev-libs/boost-compute/metadata.xml | 3 + dev-libs/libcuda/ChangeLog | 5 +- dev-libs/libcuda/metadata.xml | 3 + dev-libs/libgdev/ChangeLog | 5 +- dev-libs/libgdev/metadata.xml | 3 + dev-python/astropy-helpers/ChangeLog | 3 + dev-python/astropy-helpers/metadata.xml | 4 + dev-python/astroquery/ChangeLog | 5 +- dev-python/astroquery/metadata.xml | 8 +- dev-python/brewer2mpl/ChangeLog | 3 + dev-python/brewer2mpl/metadata.xml | 4 + dev-python/ccdproc/ChangeLog | 5 +- dev-python/ccdproc/metadata.xml | 8 +- dev-python/coards/metadata.xml | 3 + dev-python/dimensionful/ChangeLog | 6 +- dev-python/dimensionful/metadata.xml | 3 + dev-python/emcee/metadata.xml | 7 +- dev-python/gammapy/ChangeLog | 5 +- dev-python/gammapy/metadata.xml | 8 +- dev-python/healpy/ChangeLog | 5 +- dev-python/healpy/metadata.xml | 11 +- dev-python/imageutils/ChangeLog | 5 +- dev-python/imageutils/metadata.xml | 8 +- dev-python/matlab_wrapper/ChangeLog | 3 + dev-python/matlab_wrapper/metadata.xml | 4 + dev-python/matplotlib2tikz/ChangeLog | 13 +++ dev-python/matplotlib2tikz/Manifest | 1 + .../matplotlib2tikz/matplotlib2tikz-0.1.0.ebuild | 1 + .../matplotlib2tikz/matplotlib2tikz-9999.ebuild | 30 +++++ .../metadata.xml | 8 +- dev-python/meshpy/ChangeLog | 7 +- dev-python/meshpy/Manifest | 1 + ...meshpy-2013.1.2.ebuild => meshpy-2014.1.ebuild} | 17 ++- dev-python/meshpy/metadata.xml | 3 + dev-python/montage-wrapper/metadata.xml | 7 +- dev-python/newrelic/ChangeLog | 6 + dev-python/newrelic/Manifest | 1 + dev-python/newrelic/metadata.xml | 3 + ...-2.44.0.36.ebuild => newrelic-2.50.0.39.ebuild} | 5 + dev-python/nvidia-ml-py/metadata.xml | 3 + dev-python/photutils/ChangeLog | 5 +- dev-python/photutils/metadata.xml | 8 +- dev-python/pickleshare/ChangeLog | 13 +++ dev-python/pickleshare/Manifest | 1 + dev-python/pickleshare/metadata.xml | 18 +++ dev-python/pickleshare/pickleshare-0.5.ebuild | 1 + dev-python/pickleshare/pickleshare-9999.ebuild | 39 +++++++ dev-python/prettyplotlib/metadata.xml | 3 + dev-python/ptyprocess/ChangeLog | 18 +++ .../pysam => dev-python/ptyprocess}/metadata.xml | 4 +- dev-python/ptyprocess/ptyprocess-9999.ebuild | 25 ++++ dev-python/pyfftw/ChangeLog | 3 + dev-python/pyfftw/metadata.xml | 3 + dev-python/pyfftw/pyfftw-9999.ebuild | 9 ++ dev-python/python-ivi/ChangeLog | 3 + dev-python/python-ivi/metadata.xml | 5 +- dev-python/python-vxi11/ChangeLog | 3 + dev-python/python-vxi11/metadata.xml | 5 +- dev-python/pythoncgns/metadata.xml | 3 + dev-python/simplepam/ChangeLog | 3 + dev-python/simplepam/metadata.xml | 4 + dev-python/specutils/ChangeLog | 5 +- dev-python/specutils/metadata.xml | 8 +- dev-tex/pythontex/ChangeLog | 3 + dev-tex/pythontex/metadata.xml | 3 + profiles/categories | 3 - sci-biology/AlignGraph/ChangeLog | 3 + sci-biology/AlignGraph/metadata.xml | 3 + sci-biology/BRANCH/ChangeLog | 4 +- sci-biology/BRANCH/metadata.xml | 3 + sci-biology/BlastToSam/ChangeLog | 3 + sci-biology/BlastToSam/metadata.xml | 3 + sci-biology/HTSeq/metadata.xml | 3 + sci-biology/InterMine/ChangeLog | 4 +- sci-biology/InterMine/metadata.xml | 3 + sci-biology/argo-bin/ChangeLog | 10 ++ sci-biology/argo-bin/Manifest | 1 + sci-biology/argo-bin/argo-bin-1.0.31.ebuild | 16 +-- ...rgo-bin-1.0.31.ebuild => argo-bin-2.0.3.ebuild} | 20 ++-- sci-biology/argo/ChangeLog | 3 + sci-biology/argo/argo-1.0.24.ebuild | 9 +- sci-biology/bamtools/ChangeLog | 6 +- sci-biology/bamtools/metadata.xml | 3 + sci-biology/biobambam/ChangeLog | 6 + sci-biology/biobambam/metadata.xml | 7 +- sci-biology/blue/ChangeLog | 6 + sci-biology/blue/Manifest | 6 +- sci-biology/blue/blue-1.1.2.ebuild | 12 +- sci-biology/blue/blue-1.1.3.ebuild | 38 ++++++ sci-biology/bx-python/metadata.xml | 3 + sci-biology/codonw/ChangeLog | 8 +- ...donw-1.4.4-r1.ebuild => codonw-1.4.4-r2.ebuild} | 8 +- sci-biology/codonw/metadata.xml | 10 +- sci-biology/cutadapt/metadata.xml | 3 + sci-biology/dcmstack/ChangeLog | 13 ++- sci-biology/discrover/ChangeLog | 3 + sci-biology/discrover/metadata.xml | 3 + sci-biology/epga/ChangeLog | 3 + sci-biology/epga/metadata.xml | 3 + sci-biology/exonerate-gff3/ChangeLog | 3 + sci-biology/exonerate-gff3/metadata.xml | 3 + sci-biology/fastqc/ChangeLog | 7 ++ sci-biology/fastqc/Manifest | 2 +- .../{fastqc-0.11.2.ebuild => fastqc-0.11.3.ebuild} | 8 +- sci-biology/freebayes/ChangeLog | 3 + sci-biology/freebayes/metadata.xml | 3 + sci-biology/fsl/ChangeLog | 53 +++++---- sci-biology/khmer/ChangeLog | 5 +- sci-biology/khmer/metadata.xml | 4 + sci-biology/lighter/ChangeLog | 3 + sci-biology/lighter/metadata.xml | 3 + sci-biology/minced/ChangeLog | 3 + sci-biology/minced/metadata.xml | 3 + sci-biology/prokka/ChangeLog | 3 + sci-biology/prokka/prokka-1.11.ebuild | 2 +- sci-biology/pyfaidx/metadata.xml | 3 + sci-biology/rum/ChangeLog | 6 + sci-biology/rum/Manifest | 2 +- sci-biology/rum/metadata.xml | 3 + sci-biology/rum/rum-2.0.5.5.ebuild | 14 +-- sci-biology/sabre/ChangeLog | 3 + sci-biology/sabre/metadata.xml | 3 + sci-biology/salmon/ChangeLog | 3 + sci-biology/salmon/metadata.xml | 3 + sci-biology/scaffold_builder/ChangeLog | 10 ++ .../scaffold_builder-20131122.ebuild | 6 +- sci-biology/screed/ChangeLog | 5 +- sci-biology/screed/metadata.xml | 4 + sci-biology/scythe/ChangeLog | 6 +- sci-biology/scythe/metadata.xml | 3 + sci-biology/sga/ChangeLog | 4 +- sci-biology/sga/metadata.xml | 9 +- sci-biology/sickle/ChangeLog | 3 + sci-biology/sickle/metadata.xml | 3 + sci-biology/spm/ChangeLog | 18 +-- sci-biology/trim_galore/ChangeLog | 7 ++ sci-biology/trim_galore/Manifest | 2 +- ...alore-0.3.7.ebuild => trim_galore-0.4.0.ebuild} | 5 +- sci-chemistry/mdsctk/ChangeLog | 3 + sci-chemistry/mdsctk/metadata.xml | 3 + sci-chemistry/pymol-plugins-psico/ChangeLog | 6 +- sci-chemistry/pymol-plugins-psico/metadata.xml | 3 + sci-geosciences/pydap/metadata.xml | 3 + sci-geosciences/pydap_handlers_cdms/metadata.xml | 3 + sci-geosciences/pydap_handlers_csv/metadata.xml | 3 + sci-geosciences/pydap_handlers_hdf5/metadata.xml | 3 + sci-geosciences/pydap_handlers_nca/metadata.xml | 3 + sci-geosciences/pydap_handlers_netcdf/metadata.xml | 3 + sci-geosciences/pydap_handlers_proxy/metadata.xml | 3 + sci-geosciences/pydap_handlers_sql/metadata.xml | 3 + sci-geosciences/pydap_handlers_sqlite/metadata.xml | 3 + sci-geosciences/pydap_responses_kml/metadata.xml | 3 + .../pydap_responses_matlab/metadata.xml | 3 + .../pydap_responses_netcdf/metadata.xml | 3 + sci-geosciences/pydap_responses_wms/metadata.xml | 3 + sci-geosciences/pydap_responses_xls/metadata.xml | 3 + sci-libs/clblas/ChangeLog | 11 ++ sci-libs/clblas/clblas-2.2.ebuild | 19 ++- sci-libs/clblas/clblas-2.4.ebuild | 63 +++++++++- sci-libs/clblas/clblas-9999.ebuild | 18 +-- sci-libs/clblas/metadata.xml | 3 + sci-libs/clfft/ChangeLog | 15 +++ sci-libs/clfft/Manifest | 1 - sci-libs/clfft/clfft-0.9999.ebuild | 54 ++++++++- sci-libs/clfft/clfft-2.2.ebuild | 1 - .../{clfft-9999.ebuild => clfft-2.4-r1.ebuild} | 28 ++--- sci-libs/clfft/clfft-2.4.ebuild | 1 - sci-libs/clfft/clfft-9999.ebuild | 28 ++--- .../files/clfft-2.4-fix-cmake-config-install.patch | 128 +++++++++++++++++++++ ...ll-cmake-configuration-to-lib-cmake-clFFT.patch | 25 ++++ sci-libs/clfft/metadata.xml | 3 + sci-libs/clrng/ChangeLog | 3 + sci-libs/clrng/metadata.xml | 3 + sci-libs/elmer-eio/Manifest | 2 +- sci-libs/gotoblas2/ChangeLog | 7 +- sci-libs/gotoblas2/gotoblas2-1.13.ebuild | 4 +- sci-libs/gotoblas2/metadata.xml | 14 +-- sci-libs/libmaus/ChangeLog | 6 + sci-libs/libmaus/metadata.xml | 7 +- sci-libs/matc/ChangeLog | 11 +- sci-libs/matc/Manifest | 5 +- .../{matc-6.0_p4651.ebuild => matc-8.0.ebuild} | 15 +-- sci-libs/matc/matc-9999.ebuild | 20 ++-- sci-libs/nipy/metadata.xml | 3 + sci-libs/pydicom/ChangeLog | 16 +-- sci-libs/xraylib/ChangeLog | 7 ++ sci-libs/xraylib/metadata.xml | 3 + sci-libs/xraylib/xraylib-2.16.0.ebuild | 8 +- sci-libs/xraylib/xraylib-3.1.0.ebuild | 6 +- sci-mathematics/cipi/ChangeLog | 6 +- sci-mathematics/cipi/metadata.xml | 3 + sci-mathematics/pulp/metadata.xml | 3 + sci-misc/simx/ChangeLog | 5 +- sci-misc/simx/metadata.xml | 3 + sci-visualization/yt/metadata.xml | 15 ++- sys-cluster/pyslice/metadata.xml | 3 + x11-misc/envytools/ChangeLog | 5 +- x11-misc/envytools/metadata.xml | 3 + 204 files changed, 1291 insertions(+), 292 deletions(-)
