commit: b227f985711f1cfb5fac1f68edcb816b5ae150d6
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat May 30 05:52:06 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 5 06:21:03 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b227f985
sci-biology/codonw: Workaround file collision by appending PN to every command,
bug #344713, bug #550388
Package-Manager: portage-2.2.20
sci-biology/codonw/ChangeLog | 8 +++++++-
.../codonw/{codonw-1.4.4-r1.ebuild => codonw-1.4.4-r2.ebuild} | 8 +++++---
sci-biology/codonw/metadata.xml | 10 +++++-----
3 files changed, 17 insertions(+), 9 deletions(-)
diff --git a/sci-biology/codonw/ChangeLog b/sci-biology/codonw/ChangeLog
index 00b6629..ee52e96 100644
--- a/sci-biology/codonw/ChangeLog
+++ b/sci-biology/codonw/ChangeLog
@@ -2,6 +2,13 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*codonw-1.4.4-r2 (30 May 2015)
+
+ 30 May 2015; Justin Lecher <[email protected]> +codonw-1.4.4-r2.ebuild,
+ -codonw-1.4.4-r1.ebuild, metadata.xml:
+ sci-biology/codonw: Workaround file collision by appending PN to every
+ command, bug #344713, bug #550388
+
10 Jan 2015; Marius Brehler <[email protected]>
condow-1.4.4-r1.ebuild:
Move to EAPI=5.
@@ -14,4 +21,3 @@
28 Feb 2009; Andrey Kislyuk <[email protected]> ChangeLog:
New package sci-biology/codonw, ebuild written by me
-
diff --git a/sci-biology/codonw/codonw-1.4.4-r1.ebuild
b/sci-biology/codonw/codonw-1.4.4-r2.ebuild
similarity index 89%
rename from sci-biology/codonw/codonw-1.4.4-r1.ebuild
rename to sci-biology/codonw/codonw-1.4.4-r2.ebuild
index 85c0c5e..99c6994 100644
--- a/sci-biology/codonw/codonw-1.4.4-r1.ebuild
+++ b/sci-biology/codonw/codonw-1.4.4-r2.ebuild
@@ -20,7 +20,8 @@ KEYWORDS="~amd64 ~x86"
S=${WORKDIR}/codonW
src_prepare() {
- sed -e 's/$(CC) -c/& -DBSD/' \
+ sed \
+ -e 's/$(CC) -c/& -DBSD/' \
-e 's/$(CFLAGS) $(objects)/$(CFLAGS) $(LDFLAGS) $(objects)/' \
-i Makefile || die
}
@@ -30,10 +31,11 @@ src_compile() {
}
src_install() {
- dobin codonw
+ local i
+ dobin ${PN}
# woohoo watch out for collisions
for i in rscu cu aau raau tidy reader cutab cutot transl bases base3s
dinuc cai fop gc3s gc cbi enc; do
- dosym codonw /usr/bin/${i}
+ dosym codonw /usr/bin/${i}-${PN}
done
dodoc *.txt
}
diff --git a/sci-biology/codonw/metadata.xml b/sci-biology/codonw/metadata.xml
index 3302123..fc7c769 100644
--- a/sci-biology/codonw/metadata.xml
+++ b/sci-biology/codonw/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
<pkgmetadata>
- <maintainer>
- <email>[email protected]</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <maintainer>
+ <email>[email protected]</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
</pkgmetadata>
