commit: 79bbc72e8f4f267272b3b7310165bd582ce50a46 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon May 25 23:29:14 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon May 25 23:29:14 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=79bbc72e
version bump; quote variables Package-Manager: portage-2.2.18 sci-biology/wgs-assembler/ChangeLog | 6 ++++++ sci-biology/wgs-assembler/wgs-assembler-8.2.ebuild | 24 ++++++++++----------- ...8.3_rc1.ebuild => wgs-assembler-8.3_rc2.ebuild} | 25 +++++++++++----------- 3 files changed, 30 insertions(+), 25 deletions(-) diff --git a/sci-biology/wgs-assembler/ChangeLog b/sci-biology/wgs-assembler/ChangeLog index 6299944..d52282e 100644 --- a/sci-biology/wgs-assembler/ChangeLog +++ b/sci-biology/wgs-assembler/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*wgs-assembler-8.3_rc2 (25 May 2015) + + 25 May 2015; Martin Mokrejs <[email protected]> + +wgs-assembler-8.3_rc2.ebuild, -wgs-assembler-8.3_rc1.ebuild: + version bump + *wgs-assembler-8.2 (18 Apr 2015) *wgs-assembler-8.3_rc1 (18 Apr 2015) diff --git a/sci-biology/wgs-assembler/wgs-assembler-8.2.ebuild b/sci-biology/wgs-assembler/wgs-assembler-8.2.ebuild index 831af99..c9e5641 100644 --- a/sci-biology/wgs-assembler/wgs-assembler-8.2.ebuild +++ b/sci-biology/wgs-assembler/wgs-assembler-8.2.ebuild @@ -2,7 +2,7 @@ # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild,v 1.3 2012/11/13 19:19:00 nativemad Exp $ -EAPI=4 +EAPI=5 PYTHON_DEPEND=2 @@ -59,20 +59,20 @@ src_install() { sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die - dobin kmer/${MY_S}/bin/* - insinto /usr/$(get_libdir)/${PN} - use static-libs && doins kmer/${MY_S}/lib/* + dobin kmer/"${MY_S}"/bin/* + insinto /usr/"$(get_libdir)/${PN}" + use static-libs && doins kmer/"${MY_S}"/lib/* - insinto /usr/include/${PN} - doins kmer/${MY_S}/include/* + insinto /usr/include/"${PN}" + doins kmer/"${MY_S}"/include/* - insinto /usr/share/${PN}/lib - doins -r ${MY_S}/bin/TIGR - rm -rf ${MY_S}/bin/TIGR || die - dobin ${MY_S}/bin/* - use static-libs && dolib.a ${MY_S}/lib/* + insinto /usr/share/"${PN}"/lib + doins -r "${MY_S}"/bin/TIGR + rm -rf "${MY_S}"/bin/TIGR || die + dobin "${MY_S}"/bin/* + use static-libs && dolib.a "${MY_S}"/lib/* dodoc README # avoid file collision - rm -f ${D}/usr/bin/jellyfish + rm -f "${D}"/usr/bin/jellyfish } diff --git a/sci-biology/wgs-assembler/wgs-assembler-8.3_rc1.ebuild b/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild similarity index 80% rename from sci-biology/wgs-assembler/wgs-assembler-8.3_rc1.ebuild rename to sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild index 73518ed..22a765b 100644 --- a/sci-biology/wgs-assembler/wgs-assembler-8.3_rc1.ebuild +++ b/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild @@ -2,18 +2,17 @@ # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild,v 1.3 2012/11/13 19:19:00 nativemad Exp $ -EAPI=4 +EAPI=5 PYTHON_DEPEND=2 inherit eutils python toolchain-funcs -MY_PV="8.3rc1" +MY_PV="${PV/_}" # convert from _rc2 to rc2 DESCRIPTION="De novo whole-genome shotgun DNA sequence assembler also known as Celera Assembler and CABOG" HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/"; -#SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2" -SRC_URI="http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3/wgs-8.3rc1.tar.bz2"; +SRC_URI="http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3/wgs-${MY_PV}.tar.bz2"; LICENSE="GPL-2" SLOT="0" @@ -62,20 +61,20 @@ src_install() { sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die - dobin kmer/${MY_S}/bin/* - insinto /usr/$(get_libdir)/${PN} - use static-libs && doins kmer/${MY_S}/lib/* + dobin kmer/"${MY_S}"/bin/* + insinto /usr/$(get_libdir)/"${PN}" + use static-libs && doins kmer/"${MY_S}"/lib/* - insinto /usr/include/${PN} - doins kmer/${MY_S}/include/* + insinto /usr/include/"${PN}" + doins kmer/"${MY_S}"/include/* insinto /usr/share/${PN}/lib - doins -r ${MY_S}/bin/TIGR - rm -rf ${MY_S}/bin/TIGR || die - dobin ${MY_S}/bin/* + doins -r "${MY_S}"/bin/TIGR + rm -rf "${MY_S}"/bin/TIGR || die + dobin "${MY_S}"/bin/* use static-libs && dolib.a ${MY_S}/lib/* dodoc README # avoid file collision - rm -f ${D}/usr/bin/jellyfish + rm -f "${D}"/usr/bin/jellyfish }
