commit: 7926b6f0844083f7e9c3976c00cdf61ebebcf501 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun May 10 17:24:18 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun May 10 17:24:18 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7926b6f0
sci-biology/beagle: a skeleton for a new java package with just *.java files provided Package-Manager: portage-2.2.18 sci-biology/beagle/ChangeLog | 10 ++++++++++ sci-biology/beagle/beagle-4.0.ebuild | 24 ++++++++++++++++++++++++ sci-biology/beagle/metadata.xml | 9 +++++++++ 3 files changed, 43 insertions(+) diff --git a/sci-biology/beagle/ChangeLog b/sci-biology/beagle/ChangeLog new file mode 100644 index 0000000..99f4578 --- /dev/null +++ b/sci-biology/beagle/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/beagle +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*beagle-4.0 (10 May 2015) + + 10 May 2015; Martin Mokrejs <[email protected]> +beagle-4.0.ebuild, + +metadata.xml: + sci-biology/beagle: a skeleton for a new java package with just *.java files + provided diff --git a/sci-biology/beagle/beagle-4.0.ebuild b/sci-biology/beagle/beagle-4.0.ebuild new file mode 100644 index 0000000..9652198 --- /dev/null +++ b/sci-biology/beagle/beagle-4.0.ebuild @@ -0,0 +1,24 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit java-pkg-2 java-ant-2 + +DESCRIPTION="Genotype calling, genotype phasing, imputation of ungenotyped markers, identity-by-descent segment detection" +HOMEPAGE="http://faculty.washington.edu/browning/beagle/beagle.html"; +SRC_URI="http://faculty.washington.edu/browning/beagle/beagle.r1399.src.zip + http://faculty.washington.edu/browning/beagle/beagle.03Mar15.pdf + http://faculty.washington.edu/browning/beagle/run.beagle.r1399.example -> ${PN}-example.sh + http://faculty.washington.edu/browning/beagle/release_notes -> ${PN}-release_notes.txt" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=">=virtual/jdk-1.7" +RDEPEND="${DEPEND} + >=virtual/jdk-1.7 + sci-biology/conform-gt" diff --git a/sci-biology/beagle/metadata.xml b/sci-biology/beagle/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/beagle/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
