commit: b01f66fab12d15b2ab19af9f8ca677924dbd6132 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue May 5 15:11:40 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue May 5 15:11:40 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b01f66fa
sci-biology/polyphen: package skeleton Package-Manager: portage-2.2.18 sci-biology/polyphen/ChangeLog | 9 +++++++++ sci-biology/polyphen/metadata.xml | 9 +++++++++ sci-biology/polyphen/polyphen-2.2.2.ebuild | 27 +++++++++++++++++++++++++++ 3 files changed, 45 insertions(+) diff --git a/sci-biology/polyphen/ChangeLog b/sci-biology/polyphen/ChangeLog new file mode 100644 index 0000000..da1810a --- /dev/null +++ b/sci-biology/polyphen/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/polyphen +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*polyphen-2.2.2 (05 May 2015) + + 05 May 2015; Martin Mokrejs <[email protected]> +metadata.xml, + +polyphen-2.2.2.ebuild: + sci-biology/polyphen: package skeleton diff --git a/sci-biology/polyphen/metadata.xml b/sci-biology/polyphen/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/polyphen/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/polyphen/polyphen-2.2.2.ebuild b/sci-biology/polyphen/polyphen-2.2.2.ebuild new file mode 100644 index 0000000..3f602cf --- /dev/null +++ b/sci-biology/polyphen/polyphen-2.2.2.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Predict effect of aminoacid substitution on human protein function" +HOMEPAGE="http://genetics.bwh.harvard.edu/pph2/dokuwiki/start"; +SRC_URI="http://genetics.bwh.harvard.edu/pph2/dokuwiki/_media/polyphen-2.2.2r405b.tar.gz"; + +LICENSE="polyphen" # for non-commercial use only +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +# 3.7GB +# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-databases-2011_12.tar.bz2 + +# 2.4GB +# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-mlc-2011_12.tar.bz2 + +# 895MB +# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-multiz-2009_10.tar.bz2 +
