commit: 8ab10cff36c560acfd3add445a1b9848d7c92998
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat May 2 13:16:41 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat May 2 13:16:41 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8ab10cff
sci-biology/lastz: version bump
Package-Manager: portage-2.2.18
sci-biology/lastz/ChangeLog | 10 ++++-
sci-biology/lastz/files/lastz-1.03.34-build.patch | 43 ----------------------
sci-biology/lastz/files/lastz-1.03.66-build.patch | 37 +++++++++++++++++++
.../{lastz-1.03.34.ebuild => lastz-1.03.66.ebuild} | 2 +-
4 files changed, 46 insertions(+), 46 deletions(-)
diff --git a/sci-biology/lastz/ChangeLog b/sci-biology/lastz/ChangeLog
index 45c8896..eac5415 100644
--- a/sci-biology/lastz/ChangeLog
+++ b/sci-biology/lastz/ChangeLog
@@ -1,7 +1,14 @@
# ChangeLog for sci-biology/lastz
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*lastz-1.03.66 (02 May 2015)
+
+ 02 May 2015; Martin Mokrejs <[email protected]>
+ +files/lastz-1.03.66-build.patch, +lastz-1.03.66.ebuild,
+ -files/lastz-1.03.34-build.patch, -lastz-1.03.34.ebuild:
+ sci-biology/lastz: version bump
+
12 Jun 2013; Justin Lecher <[email protected]> -lastz-1.02.00.ebuild,
+lastz-1.03.34.ebuild, +files/lastz-1.03.34-build.patch, metadata.xml:
Version Bump; fix license; bump to EAPI=5; fix buildsystem
@@ -17,4 +24,3 @@
16 Jan 2012; Martin Mokrejs <[email protected]>
+lastz-1.02.00.ebuild, +metadata.xml:
initial ebuild
-
diff --git a/sci-biology/lastz/files/lastz-1.03.34-build.patch
b/sci-biology/lastz/files/lastz-1.03.34-build.patch
deleted file mode 100644
index bc3a8c0..0000000
--- a/sci-biology/lastz/files/lastz-1.03.34-build.patch
+++ /dev/null
@@ -1,43 +0,0 @@
- src/Makefile | 11 ++++++-----
- 1 file changed, 6 insertions(+), 5 deletions(-)
-
-diff --git a/src/Makefile b/src/Makefile
-index f628f3c..5bb11bf 100644
---- a/src/Makefile
-+++ b/src/Makefile
-@@ -1,7 +1,7 @@
- include ../make-include.mak
- include version.mak
-
--CC=gcc
-+CC?=gcc
-
- # default targets
-
-@@ -48,7 +48,8 @@ VERSION_FLAGS= \
- -DSUBVERSION_REV="\"${SUBVERSION_REV}"\"
-
-
--CFLAGS = -O3 ${definedForAll} ${VERSION_FLAGS}
-+CFLAGS ?= -O3 ${definedForAll}
-+CFLAGS += ${VERSION_FLAGS}
-
-
- srcFiles = lastz infer_scores \
-@@ -78,13 +79,13 @@ incFiles = lastz.h infer_scores.h \
-
-
- lastz: $(foreach part,${srcFiles},${part}.o)
-- $(CC) $(foreach part,${srcFiles},${part}.o) -lm -o $@
-+ $(CC) $(LDFLAGS) $(foreach part,${srcFiles},${part}.o) -lm -o $@
-
- lastz_D: $(foreach part,${srcFiles},${part}_D.o)
-- $(CC) $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
-+ $(CC) $(LDFLAGS) $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
-
- lastz_32: $(foreach part,${srcFiles},${part}_32.o)
-- $(CC) $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
-+ $(CC) $(LDFLAGS) $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
-
- # cleanup
-
diff --git a/sci-biology/lastz/files/lastz-1.03.66-build.patch
b/sci-biology/lastz/files/lastz-1.03.66-build.patch
new file mode 100644
index 0000000..0b9a948
--- /dev/null
+++ b/sci-biology/lastz/files/lastz-1.03.66-build.patch
@@ -0,0 +1,37 @@
+--- src/Makefile.old 2015-05-02 15:07:56.169136255 +0200
++++ src/Makefile 2015-05-02 15:10:02.249137955 +0200
+@@ -1,7 +1,7 @@
+ include ../make-include.mak
+ include version.mak
+
+-CC=gcc
++CC?=gcc
+
+ # default targets
+
+@@ -71,7 +71,7 @@
+ -DSUBVERSION_REV="\"${SUBVERSION_REV}"\"
+
+
+-CFLAGS = -O3 ${definedForAll} ${VERSION_FLAGS}
++CFLAGS += ${definedForAll} ${VERSION_FLAGS}
+
+
+ srcFiles = lastz infer_scores \
+@@ -101,13 +101,13 @@
+
+
+ lastz: $(foreach part,${srcFiles},${part}.o)
+- ${CC} $(foreach part,${srcFiles},${part}.o) -lm -o $@
++ ${CC} $(LDFLAGS) $(foreach part,${srcFiles},${part}.o) -lm -o $@
+
+ lastz_D: $(foreach part,${srcFiles},${part}_D.o)
+- ${CC} $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
++ ${CC} $(LDFLAGS) $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
+
+ lastz_32: $(foreach part,${srcFiles},${part}_32.o)
+- ${CC} $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
++ ${CC} $(LDFLAGS) $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
+
+ # cleanup
+
diff --git a/sci-biology/lastz/lastz-1.03.34.ebuild
b/sci-biology/lastz/lastz-1.03.66.ebuild
similarity index 94%
rename from sci-biology/lastz/lastz-1.03.34.ebuild
rename to sci-biology/lastz/lastz-1.03.66.ebuild
index 32364b2..af89d99 100644
--- a/sci-biology/lastz/lastz-1.03.34.ebuild
+++ b/sci-biology/lastz/lastz-1.03.66.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
