commit: ada126f6eddf67c7a11945c947246b5e22be20b4 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Apr 27 11:11:33 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Apr 27 11:11:33 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ada126f6
sci-biology/minced: new package; the /usr/bin/minced wrapper for the minced.jar does not work Package-Manager: portage-2.2.18 sci-biology/minced/ChangeLog | 10 ++++++++++ sci-biology/minced/metadata.xml | 9 +++++++++ sci-biology/minced/minced-9999.ebuild | 29 +++++++++++++++++++++++++++++ 3 files changed, 48 insertions(+) diff --git a/sci-biology/minced/ChangeLog b/sci-biology/minced/ChangeLog new file mode 100644 index 0000000..7b11290 --- /dev/null +++ b/sci-biology/minced/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/minced +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*minced-9999 (27 Apr 2015) + + 27 Apr 2015; Martin Mokrejs <[email protected]> +metadata.xml, + +minced-9999.ebuild: + sci-biology/minced: new package; the /usr/bin/minced wrapper for the + minced.jar does not work diff --git a/sci-biology/minced/metadata.xml b/sci-biology/minced/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/minced/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/minced/minced-9999.ebuild b/sci-biology/minced/minced-9999.ebuild new file mode 100644 index 0000000..04ec64a --- /dev/null +++ b/sci-biology/minced/minced-9999.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit git-r3 java-pkg-2 + +DESCRIPTION="Short Palindromic Repeat finder tool (for CRISPRs)" +HOMEPAGE="https://github.com/ctSkennerton/minced/tree/master"; +EGIT_REPO_URI="https://github.com/ctSkennerton/minced.git"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=">=virtual/jdk-1.7" +RDEPEND=">=virtual/jre-1.7" + +src_compile(){ + emake +} + +src_install(){ + java-pkg_newjar minced.jar + java-pkg_dolauncher minced --jar minced.jar # --main minced.minced + dodoc README +}
