dilfridge 15/04/18 18:48:04 Modified: ChangeLog Added: Bio-SamTools-1.410.0.ebuild Log: Version bump (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key 0B08240A96F66571)
Revision Changes Path 1.18 dev-perl/Bio-SamTools/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.18&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.18&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.17&r2=1.18 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v retrieving revision 1.17 retrieving revision 1.18 diff -u -r1.17 -r1.18 --- ChangeLog 7 Apr 2015 14:12:32 -0000 1.17 +++ ChangeLog 18 Apr 2015 18:48:04 -0000 1.18 @@ -1,6 +1,12 @@ # ChangeLog for dev-perl/Bio-SamTools -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.17 2015/04/07 14:12:32 jlec Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.18 2015/04/18 18:48:04 dilfridge Exp $ + +*Bio-SamTools-1.410.0 (18 Apr 2015) + + 18 Apr 2015; Andreas K. Huettel <[email protected]> + +Bio-SamTools-1.410.0.ebuild: + Version bump 02 Oct 2014; Justin Lecher <[email protected]> Bio-SamTools-1.390.0-r1.ebuild, +files/Bio-SamTools-1.390.0-samtools-1.patch: 1.1 dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild?rev=1.1&content-type=text/plain Index: Bio-SamTools-1.410.0.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild,v 1.1 2015/04/18 18:48:04 dilfridge Exp $ EAPI=5 MODULE_AUTHOR=LDS MODULE_VERSION=1.41 inherit perl-module toolchain-funcs DESCRIPTION="Read SAM/BAM database files" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" RDEPEND=" >=sci-biology/bioperl-1.6.9 >=sci-biology/samtools-1 " DEPEND="${RDEPEND} virtual/perl-ExtUtils-CBuilder >=virtual/perl-Module-Build-0.420.0 " SRC_TEST=skip # cannot load its own library, fundamentally b0rken PATCHES=( "${FILESDIR}"/${PN}-1.390.0-samtools-1.patch ) src_prepare() { find . -type f -exec chmod +w '{}' + || die sed \ -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ -i Build.PL || die sed \ -e 's|#include "bam.h"|#include "bam/bam.h"|' \ -e 's|#include "sam.h"|#include "bam/sam.h"|' \ -e 's|#include "khash.h"|#include "htslib/khash.h"|' \ -e 's|#include "faidx.h"|#include "htslib/faidx.h"|' \ -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die perl-module_src_prepare tc-export CC }
