commit: 7516202601abbac750c7fb7ed7a8c52bafb16a49 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Apr 18 01:06:45 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Apr 18 01:06:45 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=75162026
sci-biology/rum: new package Package-Manager: portage-2.2.18 sci-biology/rum/ChangeLog | 9 +++++++++ sci-biology/rum/metadata.xml | 9 +++++++++ sci-biology/rum/rum-2.0.5.5.ebuild | 40 ++++++++++++++++++++++++++++++++++++++ 3 files changed, 58 insertions(+) diff --git a/sci-biology/rum/ChangeLog b/sci-biology/rum/ChangeLog new file mode 100644 index 0000000..3dd7b15 --- /dev/null +++ b/sci-biology/rum/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/rum +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*rum-2.0.5.5 (18 Apr 2015) + + 18 Apr 2015; Martin Mokrejs <[email protected]> +metadata.xml, + +rum-2.0.5.5.ebuild: + sci-biology/rum: new package diff --git a/sci-biology/rum/metadata.xml b/sci-biology/rum/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/rum/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/rum/rum-2.0.5.5.ebuild b/sci-biology/rum/rum-2.0.5.5.ebuild new file mode 100644 index 0000000..c8fc01b --- /dev/null +++ b/sci-biology/rum/rum-2.0.5.5.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module eutils + +DESCRIPTION="RNA-Seq Unified Mapper (digital normalization)" +HOMEPAGE="https://github.com/itmat/rum/wiki"; +SRC_URI="https://github.com/itmat/rum/archive/v2.0.5_05.tar.gz"; + +# stable +#EGIT_REPO_URI="https://github.com/PGFI/rum/tags"; + +# dev +#EGIT_REPO_URI="https://github.com/PGFI/rum"; + +LICENSE="UPennState" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-lang/perl + dev-perl/Log-Log4perl + perl-core/autodie" +RDEPEND="${DEPEND} + sci-biology/seqclean + sci-biology/blat + sci-biology/bowtie + sci-biology/seqclean" + +S="${WORKDIR}/${PN}-2.0.5_05" + +src_install(){ + emake install + rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/bowtie + rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/blat + rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/mdust +}
