commit: 812a886bdcc45c891f93fb5caf73e5cee20c9aab Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Apr 17 22:22:17 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Apr 17 22:22:17 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=812a886b
sci-biology/amos: fixed installation of perl-related files Package-Manager: portage-2.2.18 sci-biology/amos/ChangeLog | 4 ++++ sci-biology/amos/amos-3.1.0-r2.ebuild | 15 ++++++++------- sci-biology/amos/amos-9999.ebuild | 15 ++++++++------- 3 files changed, 20 insertions(+), 14 deletions(-) diff --git a/sci-biology/amos/ChangeLog b/sci-biology/amos/ChangeLog index 9bdce77..94d1ad5 100644 --- a/sci-biology/amos/ChangeLog +++ b/sci-biology/amos/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 17 Apr 2015; Martin Mokrejs <[email protected]> + amos-3.1.0-r2.ebuild, amos-9999.ebuild: + sci-biology/amos: fixed installation of perl-related files + *amos-3.1.0-r2 (31 Mar 2015) 31 Mar 2015; Martin Mokrejs <[email protected]> diff --git a/sci-biology/amos/amos-3.1.0-r2.ebuild b/sci-biology/amos/amos-3.1.0-r2.ebuild index ab8a404..2b9473d 100644 --- a/sci-biology/amos/amos-3.1.0-r2.ebuild +++ b/sci-biology/amos/amos-3.1.0-r2.ebuild @@ -5,9 +5,11 @@ EAPI=5 PYTHON_COMPAT=( python2_7 ) - inherit eutils python-r1 +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit perl-module eutils toolchain-funcs + DESCRIPTION="A Modular, Open-Source whole genome assembler" HOMEPAGE="http://amos.sourceforge.net/"; SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" @@ -55,12 +57,11 @@ src_install() { python_replicate_script "${ED}"/usr/bin/goBambus2 # bambus needs TIGR::FASTAreader.pm and others # configure --libdir sadly copies both *.a files and *.pm into /usr/lib64/AMOS/ and /usr/lib64/TIGR/, work around it - mkdir -p "${D}"/usr/share/"${PN}"/perl/AMOS || die - mv "${D}"/usr/lib64/AMOS/*.pm "${D}"/usr/share/"${PN}"/perl/AMOS || die - mkdir -p "${D}"/usr/share/"${PN}"/perl/TIGR || die - mv "${D}"/usr/lib64/TIGR/*.pm "${D}"/usr/share/"${PN}"/perl/TIGR || die - echo "PERL5LIB=/usr/share/${PN}/perl" > "${S}/99${PN}" - doenvd "${S}/99${PN}" || die + perl_set_version + insinto ${VENDOR_LIB} + dobin "${D}"/usr/lib64/AMOS/*.pm + insinto ${VENDOR_LIB}/TIGR + dobin "${D}"/usr/lib64/TIGR/*.pm # move also /usr/lib64/AMOS/AMOS.py to /usr/bin mv "${D}"/usr/lib64/AMOS/*.py "${D}"/usr/bin || die } diff --git a/sci-biology/amos/amos-9999.ebuild b/sci-biology/amos/amos-9999.ebuild index 610c3d6..71b247d 100644 --- a/sci-biology/amos/amos-9999.ebuild +++ b/sci-biology/amos/amos-9999.ebuild @@ -4,8 +4,10 @@ EAPI=5 -AUTOTOOLS_AUTORECONF=true +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit perl-module eutils toolchain-funcs +AUTOTOOLS_AUTORECONF=true inherit autotools-utils git-r3 DESCRIPTION="Genome assembly package live cvs sources" @@ -36,12 +38,11 @@ src_install() { python_replicate_script "${ED}"/usr/bin/goBambus2 # bambus needs TIGR::FASTAreader.pm and others # configure --libdir sadly copies both *.a files and *.pm into /usr/lib64/AMOS/ and /usr/lib64/TIGR/, work around it - mkdir -p "${D}/usr/share/${PN}/perl/AMOS" || die - mv "${D}"/usr/lib64/AMOS/*.pm "${D}/usr/share/${PN}/perl/AMOS" || die - mkdir -p "${D}"/usr/share/"${PN}"/perl/TIGR || die - mv "${D}"/usr/lib64/TIGR/*.pm "${D}"/usr/share/"${PN}"/perl/TIGR || die - echo "PERL5LIB=/usr/share/${PN}/perl" > "${S}/99${PN}" - doenvd "${S}/99${PN}" || die + perl_set_version + insinto ${VENDOR_LIB} + dobin "${D}"/usr/lib64/AMOS/*.pm + insinto ${VENDOR_LIB}/TIGR + dobin "${D}"/usr/lib64/TIGR/*.pm # move also /usr/lib64/AMOS/AMOS.py to /usr/bin mv "${D}"/usr/lib64/AMOS/*.py "${D}"/usr/bin || die }
